OOIR: Observatory of International Research

Papers

(The H4-Index of Microbial Genomics is 25. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-01-01 to 2026-01-01.)

Article	Citations
Helicobacter cinaedi is a human-adapted lineage in the Helicobacter cinaedi/canicola/‘magdeburgensis’ complex	355
Multiple independent losses of sporulation and peptidoglycan in the Mycoplasmatales and related orders of the class Bacilli	134
Genomic and pathogenicity analyses to identify the causative agent from multiple serogroups of non-O1, non-O139 Vibrio cholerae in foodborne outbreaks	67
Dairy streptococcal cell wall and exopolysaccharide genome diversity	64
Development and validation of a core-genome multilocus sequence typing scheme for Legionella longbeachae	60
Molecular characterization of Coxsackievirus A2 isolated from hand, foot and mouth disease in eastern China	55
Assessing the safety of microbiome perturbations	51
Acquisition of Type I methyltransferase via horizontal gene transfer increases the drug resistance of Aeromonas veronii	49
Optimization of high-throughput 16S rRNA gene amplicon sequencing: an assessment of PCR pooling, mastermix use and contamination	47
The primate gut microbiota contributes to interspecific differences in host metabolism	43
Transcriptional landscape of Burkholderia pseudomallei cultured under environmental and clinical conditions	42
Development of a novel streamlined workflow (AACRE) and database (inCREDBle) for genomic analysis of carbapenem-resistant Enterobacterales	42
Analysis of genome instability and implications for the consequent phenotype in Plasmodium falciparum containing mutated MSH2-1 (P513T)	37
Assembly collapsing versus heterozygosity oversizing: detection of homokaryotic and heterokaryotic Laccaria trichodermophora strains by hybrid genome assembly	37
Comparative genomics of a novel Erwinia species associated with the Highland midge (Culicoides impunctatus)	33
Identifying gene-level mechanisms of successful dispersal of Vibrio parahaemolyticus during El Niño events	31
The clinical, genomic, and microbiological profile of invasive multi-drug resistant Escherichia coli in a major teaching hospital in the United Kingdom	31
Novel emm4 lineage associated with an upsurge in invasive group A streptococcal disease in the Netherlands, 2022	31
A metagenomic approach to One Health surveillance of antimicrobial resistance in a UK veterinary centre	30
Evaluating the impact of genomic epidemiology of methicillin-resistant Staphylococcus aureus (MRSA) on hospital infection prevention and control decisions	27
Identification of further variation at the lipooligosaccharide outer core locus in Acinetobacter baumannii genomes and extension of the OCL reference sequence database for Kaptive	27
A systematic review of economic evaluations of whole-genome sequencing for the surveillance of bacterial pathogens	27
Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics	26
On the limits of 16S rRNA gene-based metagenome prediction and functional profiling	25
Transcriptomic analysis of Pseudomonas ogarae F113 reveals the antagonistic roles of AmrZ and FleQ during rhizosphere adaption	25