OOIR: Observatory of International Research

Papers

(The H4-Index of Microbial Genomics is 24. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)

Article	Citations
Corrigendum: Genomic evolution and local epidemiology of Klebsiella pneumoniae from a major hospital in Beijing, China, over a 15 year period: dissemination of known and novel high-risk clones	513
Helicobacter cinaedi is a human-adapted lineage in the Helicobacter cinaedi/canicola/‘magdeburgensis’ complex	290
Bilateral symmetry of linear streptomycete chromosomes	115
Dairy streptococcal cell wall and exopolysaccharide genome diversity	60
Genomic and pathogenicity analyses to identify the causative agent from multiple serogroups of non-O1, non-O139 Vibrio cholerae in foodborne outbreaks	59
Transcriptomic analysis of Pseudomonas ogarae F113 reveals the antagonistic roles of AmrZ and FleQ during rhizosphere adaption	48
Comparative genomics of a novel Erwinia species associated with the Highland midge (Culicoides impunctatus)	46
Transcriptional landscape of Burkholderia pseudomallei cultured under environmental and clinical conditions	46
Identifying gene-level mechanisms of successful dispersal of Vibrio parahaemolyticus during El Niño events	41
A comparative study of pan-genome methods for microbial organisms: Acinetobacter baumannii pan-genome reveals structural variation in antimicrobial resistance-carrying plasmids	35
Genomic comparisons of Escherichia coli ST131 from Australia	34
Context-aware genomic surveillance reveals hidden transmission of a carbapenemase-producing Klebsiella pneumoniae	34
Acquisition of Type I methyltransferase via horizontal gene transfer increases the drug resistance of Aeromonas veronii	33
Novel emm4 lineage associated with an upsurge in invasive group A streptococcal disease in the Netherlands, 2022	33
Identification of further variation at the lipooligosaccharide outer core locus in Acinetobacter baumannii genomes and extension of the OCL reference sequence database for Kaptive	31
On the limits of 16S rRNA gene-based metagenome prediction and functional profiling	30
The primate gut microbiota contributes to interspecific differences in host metabolism	30
The clinical, genomic, and microbiological profile of invasive multi-drug resistant Escherichia coli in a major teaching hospital in the United Kingdom	29
A systematic review of economic evaluations of whole-genome sequencing for the surveillance of bacterial pathogens	29
Development of a novel streamlined workflow (AACRE) and database (inCREDBle) for genomic analysis of carbapenem-resistant Enterobacterales	28
Analysis of genome instability and implications for the consequent phenotype in Plasmodium falciparum containing mutated MSH2-1 (P513T)	28
Assembly collapsing versus heterozygosity oversizing: detection of homokaryotic and heterokaryotic Laccaria trichodermophora strains by hybrid genome assembly	28
Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics	26
Assessing the safety of microbiome perturbations	25
Distribution and genomic characterization of tigecycline-resistant tet(X4)-positive Escherichia coli of swine farm origin	24