Biomedical Optics Express

Article	Citations
Multimodal analysis of traction forces and the temperature dynamics of living cells with a diamond-embedded substrate	119
Depth-resolved extraction of optical attenuation for glaucoma assessment in clinical settings: a pilot study	71
Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy: publisher’s note	65
Fast and customizable image formation model for optical coherence tomography	58
Real-time closed-loop tissue-specific laser osteotomy using deep-learning-assisted optical coherence tomography	58
Longitudinal tracking of perfluorooctanoic acid exposure on mammary epithelial cell spheroids by dynamic optical coherence tomography	57
Aberration compensation in Doppler holography of the human eye fundus by subaperture signal correlation	54
Optical memory effect of excised cataractous human crystalline lenses	52
Unpaired intra-operative OCT (iOCT) video super-resolution with contrastive learning: erratum	50
Scaling method for efficient Monte Carlo simulation of fluorescence spectra from multi-layered turbid media with oblique illumination and collection geometry	44
Semi-supervised 3D retinal fluid segmentation via correlation mutual learning with global reasoning attention	43
Large diameter electrically tunable lens for ophthalmic distance accommodation	42
Hybrid deep learning and optimal graph search method for optical coherence tomography layer segmentation in diseases affecting the optic nerve	40
3D stimulated Raman spectral imaging of water dynamics associated with pectin-glycocalyceal entanglement	39
Three-dimensional mechanical characterization of murine skeletal muscle using quantitative micro-elastography	39
High-throughput and high-accuracy diagnosis of multiple myeloma with multi-object detection	38
Aberration measurement and correction on a large field of view in fluorescence microscopy	37
Portable in vivo confocal ophthalmoscope for non-contact imaging of the cornea and anterior segment of the eye	37
Tandem aberration correction optics (TACO) in wide-field structured illumination microscopy	36
In-vitro study on the identification of gastrointestinal stromal tumor tissues using laser-induced breakdown spectroscopy with chemometric methods	36
Blood metal analysis of plasmas from donors with and without SARS-CoV-2 using laser-induced breakdown spectroscopy and logistic regression	34
Raman spectromics method for fast and label-free genotype screening	33
Quantitative Jones matrix imaging using vectorial Fourier ptychography	33
Corneal endothelium assessment in specular microscopy images with Fuchs’ dystrophy via deep regression of signed distance maps	33
Evaluating the performance of OCT in assessing static and potential dynamic properties of the retinal ganglion cells and nerve fiber bundles in the living mouse eye	32

Optical tomography in a single camera frame using fringe-encoded deep-learning full-field OCT	32
Dynamic Light Scattering in Biomedical Applications: feature issue introduction	31
Label free optical transmission tomography for biosystems: intracellular structures and dynamics	30
Near-infrared, wavelength, and illumination scanning holographic tomography	29
Boosting few-shot confocal endomicroscopy image recognition with feature-level MixSiam	29
Rapid 3D isotropic imaging of whole organ with double-ring light-sheet microscopy and self-learning side-lobe elimination	29
Modelling red blood cell optical trapping by machine learning improved geometrical optics calculations	29
Systematic meta-analysis of computer-aided detection to detect early esophageal cancer using hyperspectral imaging	29
Reconfigurable hardware-accelerated, multi-channel, adaptive temperature control platform of VCSELs for high-density fNIRS/DOT	28
Thermal imaging-based core peripheral temperature difference measurement for neonatal monitoring in the NICU	28
Acoustomotive diffuse correlation spectroscopy for sensing mechanical stiffness in tissue-mimicking phantoms	28
Direct blood flow velocity measurements of zebrafish cerebral vessels with a dual-mode light-sheet microscope	28
Enhanced functionalities of immune cells separated by a microfluidic lattice: assessment based on holotomography	28
ESDiff: a joint model for low-quality retinal image enhancement and vessel segmentation using a diffusion model	27
Method for nanoparticles uptake evaluation based on double labeled fluorescent cells scanned in enhanced darkfield microscopy	27
Image formation theory of optical coherence tomography with optical aberrations and its application to computational aberration correction	27
Tailored approach to study Legionella infection using a lattice light sheet microscope (LLSM)	27
Rapid detection of hysteromyoma and cervical cancer based on serum surface-enhanced Raman spectroscopy and a support vector machine	27
Functionalized optical fiber ball-shaped biosensor for label-free, low-limit detection of IL-8 protein	27
Label-free multimodal imaging with simultaneous two-photon and three-photon microscopy and kernel-based nonlinear scaling denoising	26
Recording dynamic facial micro-expressions with a multi-focus camera array	26
Optimized U-Net model for 3D light-sheet image segmentation of zebrafish trunk vessels	26
Noncontact longitudinal shear wave imaging for the evaluation of heterogeneous porcine brain biomechanical properties using optical coherence elastography	26
Three-dimensional cerebral vasculature topological parameter extraction of transgenic zebrafish embryos with a filling-enhancement deep learning network	26
Multiscale label-free imaging of myelin in human brain tissue with polarization-sensitive optical coherence tomography and birefringence microscopy	25
Relevance and utility of the in-vivo and ex-vivo optical properties of the skin reported in the literature: a review [Invited]	25
Prediction of the postoperative prognosis in patients with non-muscle-invasive bladder cancer based on preoperative serum surface-enhanced Raman spectroscopy	25
Joint estimation of point spread function and molecule positions in SMLM informed from multiple planes	25
Serum-based Raman spectroscopic diagnosis of blast-induced brain injury in a rat model	25
Automatic zoning for retinopathy of prematurity with semi-supervised feature calibration adversarial learning	25
Recovering fetal signals transabdominally through interferometric near-infrared spectroscopy (iNIRS)	24
Mueller polarimetric imaging as a tool for detecting the effect of non-thermal plasma treatment on the skin	24
Localized transverse flow measurement with dynamic light scattering line-scan OCT	24
In-situ, real-time monitoring of thermo-mechanical properties of biological tissues undergoing laser heating and ablation	24
Peripheral detection acuity for interference fringes and screen-based Gabor gratings	24
High-speed, long-range and wide-field OCT for in vivo 3D imaging of the oral cavity achieved by a 600 kHz swept source laser	24
Four-color fluorescence cross-correlation spectroscopy with one laser and one camera	24
Mask-guided network for finger vein feature extraction and biometric identification	24
Studying fluctuating trajectories of optically confined passive tracers inside cells provides familiar active forces	24
Enabling real-time reconstruction for large field-of-view single-molecule localization microscopy using discrete field-dependent point-spread function	24
Long-term imaging of three-dimensional hyphal development using the ePetri dish	23
Analysis of the key signaling pathway of baicalin that induces autophagy in papillary thyroid cancer via an optical resonator	23
Primary assessment of medicines for expected migrastatic potential with holographic incoherent quantitative phase imaging	23
Optimal calibration of optical tweezers with arbitrary integration time and sampling frequencies: a general framework [Invited]	23
Deep learning for the detection of colon polyps with malignant potential: ex vivo classification using feature-enhanced optical coherence tomography (OCT) images	23
Spatiotemporal defocus sensitivity function of the human visual system	22
Comparison of fluorescence lifetime and multispectral imaging for quantitative multiplexing in biological tissue: erratum	22
Image stitching algorithm for super-resolution localization microscopy combined with fluorescence noise prior	22
A machine learning framework for the quantification of experimental uveitis in murine OCT	22
Microbubble dynamics and jetting near tissue-phantom biointerfaces	22

Single-shot quantitative phase microscopy: a multi-functional tool for cell analysis	22
PCIe-based FPGA-GPU heterogeneous computation for real-time multi-emitter fitting in super-resolution localization microscopy	22
Evaluation of Slowfade Diamond as a buffer for STORM microscopy	22
Three-dimensional image-guided topical photodynamic therapy system with light dosimetry dynamic planning and monitoring	22
Structural changes in the crystalline lens as a function of the postmortem interval assessed with two-photon imaging microscopy	22
Motion-less depth-selective optogenetic probe using tapered fiber and an electrically tuneable liquid crystal steering element	21
Attention mechanism-based locally connected network for accurate and stable reconstruction in Cerenkov luminescence tomography	21
Probabilistic volumetric speckle suppression in OCT using deep learning	21
Rapid and cost-effective screening of therapeutic targets for isoquercitrin in insulin resistance using virtual methods and fiber SPR biosensing	21
ISOSNet: a unified framework for cone photoreceptor detection and inner segment and outer segment length measurement from AO-OCT B-scans	21
Evaluation of a liquid membrane-based tunable lens and a solid-state LIDAR camera feedback system for presbyopia	21
Air-pulse optical coherence elastography: how excitation angle affects mechanical wave propagation	21
Photoplethysmographic analysis of retinal videodata based on the Fourier domain approach	21
Attenuation coefficient as a tool to detect changes in the white matter of the rat brain caused by different types of gliomas and irradiation	20
Microfluidic point-of-care testing device for multiplexed detection of liver function blood markers	20
Regression-based neural network for improving image reconstruction in diffuse optical tomography	20
Remote laser-speckle sensing of heart sounds for health assessment and biometric identification	20
Deep learning segmentation of the tear fluid reservoir under the sclera lens in optical coherence tomography images	20
Deep-learning-based automated measurement of outer retinal layer thickness for use in the assessment of age-related macular degeneration, applicable to both swept-source and spectral-domain OCT imagin	20
Plasmon enhanced luminescence of Tb/Eu co-doped film by Au NRs-PVA nanocomposite film	20
Blood pressure estimation by spatial pulse-wave dynamics in a facial video	20
Axial scanning of dual focus to improve light sheet microscopy	20
Extended focal depth Fourier domain optical coherence microscopy with a Bessel-beam – LP02 mode – from a higher order mode fiber	20
Fast volumetric multifocus structured illumination microscopy of subcellular dynamics in living cells	20
Multiscale imaging of corneal endothelium damage and Rho-kinase inhibitor application in mouse models of acute ocular hypertension	20
Two-dimensional nonlinear structured illumination microscopy with rsEGFP2	20
Deep learning and sub-band fluorescence imaging-based method for caries and calculus diagnosis embeddable on different smartphones	19
Comprehensive advancement in endoscopy: optical design, algorithm enhancement, and clinical validation for merged WLI and CBI imaging	19
Automatic search for photoacoustic marker using automated transrectal ultrasound	19
Nanozyme-active Au@Pt NRs array SERS platform based on a recognition competition strategy for convenient and ultrasensitive detection of miR-106a-5p associated with cerebral infarction	19
Compact and low-cost deep-ultraviolet microscope system for label-free molecular imaging and point-of-care hematological analysis	19
Fiber-laser platform for precision brain surgery	19
Real-time data processing in colorimetry camera-based single-molecule localization microscopy via CPU-GPU-FPGA heterogeneous computation	19
Polarization effects on the fluorescence emission of zebrafish neurons using light-sheet microscopy	19
Feasibility of the soft attention-based models for automatic segmentation of OCT kidney images	19
Discriminating healthy from tumor tissue in breast lumpectomy specimens using deep learning-based hyperspectral imaging	19
Confocal reflectance microscopy for mapping collagen fiber organization in the vitreous gel of the eye	19
Compression OCT-elastography combined with speckle-contrast analysis as an approach to the morphological assessment of breast cancer tissue	19
Adaptive optics scanning laser ophthalmoscopy and optical coherence tomography (AO-SLO-OCT) system for in vivo mouse retina imaging	19
Characteristics of frontal activity relevant to cognitive function in bipolar depression: an fNIRS study	18
Ultrafast laser bone ablation towards high surgical speeds and clinically relevant operation times for spine surgeries	18
Preprocessing methods for quantitative phase image stitching	18
Application of quantum imaging in biology	18
Pressure stimulus study on acupuncture points with multi-channel multimode-fiber diffuse speckle contrast analysis (MMF-DSCA)	18
Portable optical fiber biosensors integrated with smartphone: technologies, applications, and challenges [Invited]	18
Diffuse reflectance spectroscopy sensor to differentiate between glial tumor and healthy brain tissue: a proof-of-concept study	18
Adaptive optics in an oblique plane microscope	18
Retinal reconstruction from peripheral biometry	18
Fiber-optic large-depth 3D chromatic confocal endomicroscopy	18
Noninvasive measurement of the vital signs of cancer patients with a dual-path microbend fiber sensor	18
Method to improve the localization accuracy and contrast recovery of lesions in separately acquired X-ray and diffuse optical tomographic breast imaging	18
Multi-modality imaging technologies and machine learning for non-invasive, precise assessment of rabbit endometrium	18
Fabrication and performance evaluation of a design for an extended depth-of-focus intraocular lens based on an improved sinusoidal profile	18
Second harmonic generation of myofibrils exhibits a polarization-resolved “gradient” effect	18
Noninvasive estimation of superficial layer thickness using multi-channel diffuse correlation spectroscopy	18
Robustness of diffuse reflectance spectra analysis by inverse adding doubling algorithm	18
Recent breakthroughs in digital holography, 2D/3D imaging, and holographic optical elements: introduction	17
Study of cerebrovascular reactivity to hypercapnia by imaging photoplethysmography to develop a method for intraoperative assessment of the brain functional reserve	17
Non-contact confocal calcium imaging of in vivo murine corneal nerves	17
Introduction to the Biophotonics Congress 2024 feature issue	17
DIRECT, a low-cost system for high-speed, low-noise imaging of fluorescent bio-samples	17
In vivo ultrasound modulated optical tomography with a persistent spectral hole burning filter	17
Multicolor two-photon light-patterning microscope exploiting the spatio-temporal properties of a fiber bundle	17
Retinal magnification factors at the fixation locus derived from schematic eyes with four individualized surfaces	17
Development of a multiparameter phantom system for multispectral imaging	17
Asymmetric parameter enhancement in the split-ring cavity array for virus-like particle sensing	17
Self-calibrated 3D differential phase contrast microscopy with optimized illumination	17
3D transformer-enhanced multi-scale global co-attention network for precise diabetic macular edema segmentation in OCT volumes	17
Hyper-brain independent component analysis (HB-ICA): an approach for detecting inter-brain networks from fNIRS-hyperscanning data	17
Out-of-focus signal rejection for in vivo pO2 measurements using two-photon phosphorescence lifetime microscopy	17
Lock-in functional near-infrared spectroscopy for measurement of the haemodynamic brain response	17
Effects of tactile feedback in post-stroke hand rehabilitation on functional connectivity and cortical activation: an fNIRS study	17
Sinogram to image: direct reconstruction of photoacoustic tomography image using a hybrid deep learning approach	17
Perceptual cost and benefit of presbyopia-correcting intraocular lenses: effect of energy balance, addition, and adaptation	16
Study on the detection method of biological characteristics of hepatoma cells based on terahertz time-domain spectroscopy	16
CGAN-rIRN: a data-augmented deep learning approach to accurate classification of mental tasks for a fNIRS-based brain-computer interface	16
AI-aided segmentation of four types of drusen in volumetric OCT	16
Dynamic optical coherence tomography for cell analysis [Invited]	16
Dome-APIC illumination design for high space-bandwidth product analytic imaging	16
Spectroscopic thermo-elastic optical coherence tomography for tissue characterization: publisher’s note	16

Changes to the shape, orientation and packing of red cells as a function of retinal capillary size	16
Imaging of vitreous cortex hyalocyte dynamics using non-confocal quadrant-detection adaptive optics scanning light ophthalmoscopy in human subjects	16
Ultra-low-cost and high-fidelity NIR-II confocal laser scanning microscope with Bessel beam excitation and SiPM detection	16
Rapid spectral shaping for time domain and swept source full field OCT	16
Deep learning for denoising in a Mueller matrix microscope	16
Non-invasive glucose extraction by a single polarization rotator system in patients with diabetes: erratum	16
MXene-based SERS spectroscopic analysis of exosomes for lung cancer differential diagnosis with deep learning	16
Biocompatible spider silk-based metal-dielectric fiber optic sugar sensor	16
Simultaneous measurements of foveal and peripheral aberrations with accommodation in myopic and emmetropic eyes	16
Dynamic inverse SNR-decorrelation OCT angiography with GPU acceleration	16
In vivo endoscopic optical coherence elastography based on a miniature probe	16
Motion-tracking Brillouin microscopy for in-vivo corneal biomechanics mapping	16
Single-input polarization-sensitive optical coherence tomography through a catheter	15
Multimodal illumination platform for 3D single-molecule super-resolution imaging throughout mammalian cells	15
Validation of an automated method for studying retinal capillary blood flow	15
In situ measurement of the stiffness increase in the posterior sclera after UV-riboflavin crosslinking by optical coherence elastography	15
Biometry study of foveal isoplanatic patch variation for adaptive optics retinal imaging	15
Orbital angular momentum mode fiber force sensing technology based on intensity interrogation	15
Identification of late-life depression and mild cognitive impairment via serum surface-enhanced Raman spectroscopy and multivariate statistical analysis	15
Three-dimensional dynamic optical coherence tomography for breast tumor margin assessment	15
Spatial-temporal correlations in the speckle pattern for the characterization of cellular motion within a 3D object	15
Clarification on the understanding of contrast theory in relation to the article “ON and OFF receptive field processing in the presence of optical scattering”: comment	15
Quantitative comparison of spinning disk geometries for PAINT based super-resolution microscopy	15
Segmentation of anatomical layers and imaging artifacts in intravascular polarization sensitive optical coherence tomography using attending physician and boundary cardinality losses	15
Towards noninvasive white blood cell count	15
Ultra-fast line-field swept source scanning optical coherence elastography	15
Realtime and noninvasive assessment of endotracheal tube displacement using near-infrared and visible cameras	15
Rapid clearing and imaging of Mohs and melanoma surgical margins using a low-cost tissue processor	15
Femtosecond laser oocyte enucleation as a low-invasive and effective method of recipient cytoplast preparation	15
Thermal Lensing Effects in Two-Photon Light-Sheet Microscopy	15
Chirp excitation for natural frequency optical coherence elastography	15
Post-operative monitoring of tissue perfusion in murine skin flaps using enhanced thermal imaging	15
Diffuse correlation tomography: a technique to characterize tissue blood flow abnormalities in benign and malignant breast lesions	15
Simultaneous detection of circulating tumor DNAs using a SERS-based lateral flow assay biosensor for point-of-care diagnostics of head and neck cancer	15
On the physiological processes underlying optoretinography [Invited]	15
Portable, smartphone-linked, and miniaturized photonic resonator absorption microscope (PRAM Mini) for point-of-care diagnostics	15
Accelerating whole-sample polarization-resolved second harmonic generation imaging in mammary gland tissue via generative adversarial networks	15
Embedded CPU-GPU pupil tracking	15
Introduction to the Optics and the Brain 2023 feature issue	15
Dual-channel air-pulse optical coherence elastography for frequency-response analysis	15
Neural-network based high-speed volumetric dynamic optical coherence tomography	15
Elimination of stripe artifacts in light sheet fluorescence microscopy using an attention-based residual neural network	15
Ring-segment piezopolymer sensor optimized for cylindrical-wave detection in optical-resolution optoacoustic angiography with extended imaging depth	15
Imaging and component analysis of pumpkin stem tissue with simultaneous SF-CARS and TPEF microscopy	15
Introduction to the feature issue: Advances in Optical Biosensors for Biomedical Applications	15
Investigation of multiple scattering in space and spatial-frequency domains: with application to the analysis of aberration-diverse optical coherence tomography	14
Numerical calibration method for a multiple spectrometer-based OCT system	14
Deep convolutional neural networks-based scatterer density and resolution estimators in optical coherence tomography: erratum	14
Computational refocusing of Jones matrix polarization-sensitive optical coherence tomography and investigation of defocus-induced polarization artifacts	14
Weakly supervised identification of microscopic human breast cancer-related optical signatures from normal-appearing breast tissue	14
Electronic frequency shifting enables long, variable working distance optical coherence tomography	14
Performance of focus-tunable presbyopia correction lenses operated using gaze-tracking and LIDAR	14
Non-contact measurement of neck pulses achieved by imaging micro-motions in the neck skin	14
Plug-and-play DPC-based quantitative phase microscope	14
Digital histological staining of tissue slide images from optical coherence microscopy	14
Assessing depth sensitivity in laser interferometry speckle visibility spectroscopy (iSVS) through source-to-detector distance variation and cerebral blood flow monitoring in humans and rabbits	14
Laser pulse train parameters determine the brightness of a two-photon stimulus	14
GPU-accelerated image registration algorithm in ophthalmic optical coherence tomography	14
Picosecond laser capture microdissection based on edge catapulting combined with dielectrophoretic force	14
Multi-step deep neural network for identifying subfascial vessels in a dorsal skinfold window chamber model	14
MRI/fluorescence dual-mode probe: its simple preparation method and imaging application in vitro	14
Enhancing image reconstruction in photoacoustic imaging using spatial coherence mean-to-standard-deviation factor beamforming	14
Widefield optical coherence tomography by electro-optical modulation	14
Application of fluorescence lifetime imaging microscopy to monitor glucose metabolism in pancreatic islets in vivo	14
Experimental and modeling analysis of lenses with concentric cylindrical annular refractive elements: impact on peripheral imaging	14
Silver mean sequence in extended depth of focus intraocular lenses: a comparative study of kinoform and stepwise designs	14
Reconstruction based on adaptive group least angle regression for fluorescence molecular tomography	13
Visible near-infrared hyperspectral imaging and supervised classification for the detection of small intestinal necrosis tissue in vivo	13
MulitDeepsurv: Survival analysis of gastric cancer based on deep learning multimodal fusion models	13
Visualization of blood-brain barrier disruption with dual-wavelength high-resolution photoacoustic microscopy	13
Compact breast shape acquisition system for improving diffuse optical tomography image reconstructions	13
Simultaneous scattering compensation at multiple points in multi-photon microscopy	13
Laparoscopic near-infrared hyperspectral imaging system for identifying living porcine nerves and unexposed arteries	13
Pupil steering holographic display for pre-operative vision screening of cataracts	13
Chromatic cues for the sign of defocus in the peripheral retina	13
Quantifying UV-induced photodamage for longitudinal live-cell imaging applications of deep-UV microscopy	13
Temporally delayed, dual-pulse, dual-wavelength photoacoustic imaging (TD-DP-DW-PAI): advancing capabilities of a commercial light-emitting diode-based photoacoustic imaging system with a pulsed laser	13
Integrated fixation and stimulus channel for adaptive optics ophthalmoscopy	13
Diffuse reflectance spectroscopy for accurate margin assessment in breast-conserving surgeries: importance of an optimal number of fibers	13
Label-free enzymatic reaction monitoring in water-in-oil microdroplets using ultra-broadband multiplex coherent anti-Stokes Raman scattering spectroscopy	13
Relative peripheral refraction with accommodation in 6- to 11-year-olds: baseline findings from the Stockholm Myopia Study	13
LED array microscopy system correction method with comprehensive error parameters optimized by phase smoothing criterion	13
Three-dimensional oxygen concentration monitoring in hydrogels using low-cost phosphorescence lifetime imaging for tissue engineering	13
Individualized modeling for the peripheral optics of the human myopic eye	13
Learning-enhanced 3D fiber orientation mapping in thick cardiac tissues	13
Probing diffusive media through speckle differencing	13
Feature matching for texture-less endoscopy images via superpixel vector field consistency	13
Challenging the skin pigmentation bias in tissue oximetry via time-domain near-infrared spectroscopy	13
Design and characterization of a time-domain optical tomography platform for mesoscopic lifetime imaging	13
Alternating projection combined with fast gradient projection (FGP-AP) method for intensity-only measurement optical diffraction tomography in LED array microscopy	13
Dynamic-OCT simulation framework based on mathematical models of intratissue dynamics, image formation, and measurement noise	13
Biological Cells as Natural Biophotonic Devices: Fundamental and Applications–introduction to the feature issue	13
Retinal optical coherence tomography image analysis by a restricted Boltzmann machine	13
Laser speckle simulation tool based on stochastic differential equations for bio imaging applications	12
Miniature, multi-dichroic instrument for measuring the concentration of multiple fluorophores	12