Biomedical Optics Express

Article	Citations
Multimodal analysis of traction forces and the temperature dynamics of living cells with a diamond-embedded substrate	111
Depth-resolved extraction of optical attenuation for glaucoma assessment in clinical settings: a pilot study	66
Fast and customizable image formation model for optical coherence tomography	57
Three-dimensional cerebral vasculature topological parameter extraction of transgenic zebrafish embryos with a filling-enhancement deep learning network	57
3D stimulated Raman spectral imaging of water dynamics associated with pectin-glycocalyceal entanglement	55
Real-time closed-loop tissue-specific laser osteotomy using deep-learning-assisted optical coherence tomography	50
Optical tomography in a single camera frame using fringe-encoded deep-learning full-field OCT	50
Serum-based Raman spectroscopic diagnosis of blast-induced brain injury in a rat model	49
Enhanced functionalities of immune cells separated by a microfluidic lattice: assessment based on holotomography	46
Tailored approach to study Legionella infection using a lattice light sheet microscope (LLSM)	43
Longitudinal tracking of perfluorooctanoic acid exposure on mammary epithelial cell spheroids by dynamic optical coherence tomography	41
Aberration compensation in Doppler holography of the human eye fundus by subaperture signal correlation	39
Optical memory effect of excised cataractous human crystalline lenses	37
Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy: publisher’s note	37
Evaluating the performance of OCT in assessing static and potential dynamic properties of the retinal ganglion cells and nerve fiber bundles in the living mouse eye	36
Three-dimensional mechanical characterization of murine skeletal muscle using quantitative micro-elastography	35
In-vitro study on the identification of gastrointestinal stromal tumor tissues using laser-induced breakdown spectroscopy with chemometric methods	34
Direct blood flow velocity measurements of zebrafish cerebral vessels with a dual-mode light-sheet microscope	33
Quantitative Jones matrix imaging using vectorial Fourier ptychography	33
Rapid detection of hysteromyoma and cervical cancer based on serum surface-enhanced Raman spectroscopy and a support vector machine	33
Systematic meta-analysis of computer-aided detection to detect early esophageal cancer using hyperspectral imaging	33
Unpaired intra-operative OCT (iOCT) video super-resolution with contrastive learning: erratum	33
Blood metal analysis of plasmas from donors with and without SARS-CoV-2 using laser-induced breakdown spectroscopy and logistic regression	33
Reconfigurable hardware-accelerated, multi-channel, adaptive temperature control platform of VCSELs for high-density fNIRS/DOT	32
Acoustomotive diffuse correlation spectroscopy for sensing mechanical stiffness in tissue-mimicking phantoms	31

Rapid 3D isotropic imaging of whole organ with double-ring light-sheet microscopy and self-learning side-lobe elimination	31
Near-infrared, wavelength, and illumination scanning holographic tomography	31
Semi-supervised 3D retinal fluid segmentation via correlation mutual learning with global reasoning attention	30
High-throughput and high-accuracy diagnosis of multiple myeloma with multi-object detection	30
Aberration measurement and correction on a large field of view in fluorescence microscopy	29
Noncontact longitudinal shear wave imaging for the evaluation of heterogeneous porcine brain biomechanical properties using optical coherence elastography	29
Optimized U-Net model for 3D light-sheet image segmentation of zebrafish trunk vessels	29
Understanding the relationship between visual-angle and eye-angle for reliable determination of the field-of-view in ultra-wide field fundus photography	28
Multiscale label-free imaging of myelin in human brain tissue with polarization-sensitive optical coherence tomography and birefringence microscopy	28
Thermal imaging-based core peripheral temperature difference measurement for neonatal monitoring in the NICU	28
Label free optical transmission tomography for biosystems: intracellular structures and dynamics	28
Functionalized optical fiber ball-shaped biosensor for label-free, low-limit detection of IL-8 protein	27
Tandem aberration correction optics (TACO) in wide-field structured illumination microscopy	27
Method for nanoparticles uptake evaluation based on double labeled fluorescent cells scanned in enhanced darkfield microscopy	27
Large diameter electrically tunable lens for ophthalmic distance accommodation	27
Label-free multimodal imaging with simultaneous two-photon and three-photon microscopy and kernel-based nonlinear scaling denoising	27
Recording dynamic facial micro-expressions with a multi-focus camera array	27
Boosting few-shot confocal endomicroscopy image recognition with feature-level MixSiam	26
Modelling red blood cell optical trapping by machine learning improved geometrical optics calculations	26
Dynamic Light Scattering in Biomedical Applications: feature issue introduction	26
Prediction of the postoperative prognosis in patients with non-muscle-invasive bladder cancer based on preoperative serum surface-enhanced Raman spectroscopy	25
Hybrid deep learning and optimal graph search method for optical coherence tomography layer segmentation in diseases affecting the optic nerve	25
ESDiff: a joint model for low-quality retinal image enhancement and vessel segmentation using a diffusion model	25
Modeling and optimization of galvanometric point-scanning temporal dynamics	25
Raman spectromics method for fast and label-free genotype screening	25
Relevance and utility of the in-vivo and ex-vivo optical properties of the skin reported in the literature: a review [Invited]	25
Noninvasive and early diagnosis of acquired brain injury using fluorescence imaging in the NIR-II window	25
Corneal endothelium assessment in specular microscopy images with Fuchs’ dystrophy via deep regression of signed distance maps	25
Analysis of the key signaling pathway of baicalin that induces autophagy in papillary thyroid cancer via an optical resonator	24
Joint estimation of point spread function and molecule positions in SMLM informed from multiple planes	24
Microbubble dynamics and jetting near tissue-phantom biointerfaces	24
Optimal calibration of optical tweezers with arbitrary integration time and sampling frequencies: a general framework [Invited]	24
Machine learning-based rapid diagnosis of human borderline ovarian cancer on second-harmonic generation images	24
Structural changes in the crystalline lens as a function of the postmortem interval assessed with two-photon imaging microscopy	24
Rapid and cost-effective screening of therapeutic targets for isoquercitrin in insulin resistance using virtual methods and fiber SPR biosensing	24
Single-shot quantitative phase microscopy: a multi-functional tool for cell analysis	23
Image stitching algorithm for super-resolution localization microscopy combined with fluorescence noise prior	23
Motion-less depth-selective optogenetic probe using tapered fiber and an electrically tuneable liquid crystal steering element	23
Three-dimensional image-guided topical photodynamic therapy system with light dosimetry dynamic planning and monitoring	23
Spatiotemporal defocus sensitivity function of the human visual system	23
Comparison of fluorescence lifetime and multispectral imaging for quantitative multiplexing in biological tissue: erratum	23
Evaluation of Slowfade Diamond as a buffer for STORM microscopy	23
In-situ, real-time monitoring of thermo-mechanical properties of biological tissues undergoing laser heating and ablation	23
Axial scanning of dual focus to improve light sheet microscopy	22
Long-term imaging of three-dimensional hyphal development using the ePetri dish	22
A machine learning framework for the quantification of experimental uveitis in murine OCT	22
Primary assessment of medicines for expected migrastatic potential with holographic incoherent quantitative phase imaging	22
Microfluidic point-of-care testing device for multiplexed detection of liver function blood markers	22
Recovering fetal signals transabdominally through interferometric near-infrared spectroscopy (iNIRS)	22
Deep learning for the detection of colon polyps with malignant potential: ex vivo classification using feature-enhanced optical coherence tomography (OCT) images	22

Automatic search for photoacoustic marker using automated transrectal ultrasound	22
PCIe-based FPGA-GPU heterogeneous computation for real-time multi-emitter fitting in super-resolution localization microscopy	22
Attenuation coefficient as a tool to detect changes in the white matter of the rat brain caused by different types of gliomas and irradiation	21
Multiscale imaging of corneal endothelium damage and Rho-kinase inhibitor application in mouse models of acute ocular hypertension	21
Comprehensive advancement in endoscopy: optical design, algorithm enhancement, and clinical validation for merged WLI and CBI imaging	21
Studying fluctuating trajectories of optically confined passive tracers inside cells provides familiar active forces	21
Extended focal depth Fourier domain optical coherence microscopy with a Bessel-beam – LP02 mode – from a higher order mode fiber	21
Localized transverse flow measurement with dynamic light scattering line-scan OCT	21
Air-pulse optical coherence elastography: how excitation angle affects mechanical wave propagation	21
Photoplethysmographic analysis of retinal videodata based on the Fourier domain approach	21
Four-color fluorescence cross-correlation spectroscopy with one laser and one camera	21
Enabling real-time reconstruction for large field-of-view single-molecule localization microscopy using discrete field-dependent point-spread function	21
Discriminating healthy from tumor tissue in breast lumpectomy specimens using deep learning-based hyperspectral imaging	20
Mueller polarimetric imaging as a tool for detecting the effect of non-thermal plasma treatment on the skin	20
Probabilistic volumetric speckle suppression in OCT using deep learning	20
Peripheral detection acuity for interference fringes and screen-based Gabor gratings	20
ISOSNet: A Unified Framework for Cone Photoreceptor Detection and Inner Segment and Outer Segment Length Measurement from AO-OCT B-scans	20
Automatic zoning for retinopathy of prematurity with semi-supervised feature calibration adversarial learning	20
Mask-guided network for finger vein feature extraction and biometric identification	20
Deep-learning-based automated measurement of outer retinal layer thickness for use in the assessment of age-related macular degeneration, applicable to both swept-source and spectral-domain OCT imagin	20
Evaluation of a liquid membrane-based tunable lens and a solid-state LIDAR camera feedback system for presbyopia	20
Confocal reflectance microscopy for mapping collagen fiber organization in the vitreous gel of the eye	19
Deep learning segmentation of the tear fluid reservoir under the sclera lens in optical coherence tomography images	19
Feasibility of the soft attention-based models for automatic segmentation of OCT kidney images	19
Remote laser-speckle sensing of heart sounds for health assessment and biometric identification	19
Fiber-laser platform for precision brain surgery	19
Attention mechanism-based locally connected network for accurate and stable reconstruction in Cerenkov luminescence tomography	19
Fast volumetric multifocus structured illumination microscopy of subcellular dynamics in living cells	19
High-speed, long-range and wide-field OCT for in vivo 3D imaging of the oral cavity achieved by a 600 kHz swept source laser	19
Plasmon enhanced luminescence of Tb/Eu co-doped film by Au NRs-PVA nanocomposite film	19
Deep learning and sub-band fluorescence imaging-based method for caries and calculus diagnosis embeddable on different smartphones	19
Blood pressure estimation by spatial pulse-wave dynamics in a facial video	19
Adaptive optics scanning laser ophthalmoscopy and optical coherence tomography (AO-SLO-OCT) system for in vivo mouse retina imaging	19
Regression-based neural network for improving image reconstruction in diffuse optical tomography	19
Compact and low-cost deep-ultraviolet microscope system for label-free molecular imaging and point-of-care hematological analysis	19
Deep learning for denoising in a Mueller matrix microscope	19
Out-of-focus signal rejection for in vivo pO2 measurements using two-photon phosphorescence lifetime microscopy	18
Preprocessing methods for quantitative phase image stitching	18
Real-time data processing in colorimetry camera-based single-molecule localization microscopy via CPU-GPU-FPGA heterogeneous computation	18
DIRECT, a low-cost system for high-speed, low-noise imaging of fluorescent bio-samples	18
Polarization effects on the fluorescence emission of zebrafish neurons using light-sheet microscopy	18
Study of cerebrovascular reactivity to hypercapnia by imaging photoplethysmography to develop a method for intraoperative assessment of the brain functional reserve	18
Asymmetric parameter enhancement in the split-ring cavity array for virus-like particle sensing	18
Non-contact confocal calcium imaging of in vivo murine corneal nerves	18
Pressure stimulus study on acupuncture points with multi-channel multimode-fiber diffuse speckle contrast analysis (MMF-DSCA)	18
Compression OCT-elastography combined with speckle-contrast analysis as an approach to the morphological assessment of breast cancer tissue	18
Breath analysis test (TERABio®) for detection of SARS-CoV-2 infection by analysis of volatile organic compounds based on Terahertz technology	18
Ultra-low-cost and high-fidelity NIR-II confocal laser scanning microscope with Bessel beam excitation and SiPM detection	18
Retinal magnification factors at the fixation locus derived from schematic eyes with four individualized surfaces	18
Multicolor two-photon light-patterning microscope exploiting the spatio-temporal properties of a fiber bundle	18
Ultrafast laser bone ablation towards high surgical speeds and clinically relevant operation times for spine surgeries	18
Nanozyme-active Au@Pt NRs array SERS platform based on a recognition competition strategy for convenient and ultrasensitive detection of miR-106a-5p associated with cerebral infarction	18
Lock-in functional near-infrared spectroscopy for measurement of the haemodynamic brain response	18
Hyper-brain independent component analysis (HB-ICA): an approach for detecting inter-brain networks from fNIRS-hyperscanning data	18
Recent breakthroughs in digital holography, 2D/3D imaging, and holographic optical elements: introduction	17
Simultaneous measurements of foveal and peripheral aberrations with accommodation in myopic and emmetropic eyes	17
Robustness of diffuse reflectance spectra analysis by inverse adding doubling algorithm	17
Adaptive optics in an oblique plane microscope	17
Development of a multiparameter phantom system for multispectral imaging	17
Method to improve the localization accuracy and contrast recovery of lesions in separately acquired X-ray and diffuse optical tomographic breast imaging	17
Fabrication and performance evaluation of a design for an extended depth-of-focus intraocular lens based on an improved sinusoidal profile	17
Study on the detection method of biological characteristics of hepatoma cells based on terahertz time-domain spectroscopy	17
Introduction to the Biophotonics Congress 2024 feature issue	17
Retinal reconstruction from peripheral biometry	17
Performance assessment of laser sources for time-domain diffuse correlation spectroscopy	17
Diffuse reflectance spectroscopy sensor to differentiate between glial tumor and healthy brain tissue: a proof-of-concept study	17
CGAN-rIRN: a data-augmented deep learning approach to accurate classification of mental tasks for a fNIRS-based brain-computer interface	17
Changes to the shape, orientation and packing of red cells as a function of retinal capillary size	17
Fiber-optic large-depth 3D chromatic confocal endomicroscopy	17
Dynamic inverse SNR-decorrelation OCT angiography with GPU acceleration	17
Effects of tactile feedback in post-stroke hand rehabilitation on functional connectivity and cortical activation: an fNIRS study	17
Biocompatible spider silk-based metal-dielectric fiber optic sugar sensor	17
Self-calibrated 3D differential phase contrast microscopy with optimized illumination	17
Noninvasive measurement of the vital signs of cancer patients with a dual-path microbend fiber sensor	17
Multi-modality imaging technologies and machine learning for non-invasive, precise assessment of rabbit endometrium	17
MXene-based SERS spectroscopic analysis of exosomes for lung cancer differential diagnosis with deep learning	17
Imaging of vitreous cortex hyalocyte dynamics using non-confocal quadrant-detection adaptive optics scanning light ophthalmoscopy in human subjects	17
Laser pulse train parameters determine the brightness of a two-photon stimulus	16
Motion-tracking Brillouin microscopy for in-vivo corneal biomechanics mapping	16
Biometry study of foveal isoplanatic patch variation for adaptive optics retinal imaging	16

In vivo ultrasound modulated optical tomography with a persistent spectral hole burning filter	16
Spatial-temporal correlations in the speckle pattern for the characterization of cellular motion within a 3D object	16
Perceptual cost and benefit of presbyopia-correcting intraocular lenses: effect of energy balance, addition, and adaptation	16
Identification of late-life depression and mild cognitive impairment via serum surface-enhanced Raman spectroscopy and multivariate statistical analysis	16
Investigation of the scattering and attenuation properties of cataracts formed in mouse eyes with 1060-nm and 1310-nm swept-source optical coherence tomography	16
Dynamic optical coherence tomography for cell analysis [Invited]	16
Portable optical fiber biosensors integrated with smartphone: technologies, applications, and challenges [Invited]	16
Application of quantum imaging in biology	16
Dome-APIC illumination design for high space-bandwidth product analytic imaging	16
Non-invasive glucose extraction by a single polarization rotator system in patients with diabetes: erratum	16
Computational refocusing of Jones matrix polarization-sensitive optical coherence tomography and investigation of defocus-induced polarization artifacts	16
Thermal Lensing Effects in Two-Photon Light-Sheet Microscopy	16
Femtosecond laser oocyte enucleation as a low-invasive and effective method of recipient cytoplast preparation	16
Characteristics of frontal activity relevant to cognitive function in bipolar depression: an fNIRS study	16
In vivo endoscopic optical coherence elastography based on a miniature probe	16
Embedded CPU-GPU pupil tracking	16
Post-operative monitoring of tissue perfusion in murine skin flaps using enhanced thermal imaging	16
Spectroscopic thermo-elastic optical coherence tomography for tissue characterization: publisher’s note	16
Fast digital refocusing and depth of field extended Fourier ptychography microscopy	16
Realtime and noninvasive assessment of endotracheal tube displacement using near-infrared and visible cameras	16
Portable, smartphone-linked, and miniaturized photonic resonator absorption microscope (PRAM Mini) for point-of-care diagnostics	15
Ultra-fast line-field swept source scanning optical coherence elastography	15
Towards noninvasive white blood cell count	15
Segmentation of anatomical layers and imaging artifacts in intravascular polarization sensitive optical coherence tomography using attending physician and boundary cardinality losses	15
Introduction to the feature issue: Advances in Optical Biosensors for Biomedical Applications	15
Optical neural stimulation using the thermoplasmonic effect of gold nano-hexagon	15
Weakly supervised identification of microscopic human breast cancer-related optical signatures from normal-appearing breast tissue	15
In situ measurement of the stiffness increase in the posterior sclera after UV-riboflavin crosslinking by optical coherence elastography	15
Clarification on the understanding of contrast theory in relation to the article “ON and OFF receptive field processing in the presence of optical scattering”: comment	15
Three-dimensional dynamic optical coherence tomography for breast tumor margin assessment	15
Validation of an automated method for studying retinal capillary blood flow	15
Rapid clearing and imaging of Mohs and melanoma surgical margins using a low-cost tissue processor	15
Introduction to the Optics and the Brain 2023 feature issue	15
Experimental and modeling analysis of lenses with concentric cylindrical annular refractive elements: impact on peripheral imaging	15
Simultaneous detection of circulating tumor DNAs using a SERS-based lateral flow assay biosensor for point-of-care diagnostics of head and neck cancer	15
Chirp excitation for natural frequency optical coherence elastography	15
Single-input polarization-sensitive optical coherence tomography through a catheter	15
Dual-channel air-pulse optical coherence elastography for frequency-response analysis	15
Neural-network based high-speed volumetric dynamic optical coherence tomography	15
Laser induced forward transfer isolating complex-shaped cell by beam shaping	15
Diffuse correlation tomography: a technique to characterize tissue blood flow abnormalities in benign and malignant breast lesions	15
Assessing depth sensitivity in laser interferometry speckle visibility spectroscopy (iSVS) through source-to-detector distance variation and cerebral blood flow monitoring in humans and rabbits	15
Deep convolutional neural networks-based scatterer density and resolution estimators in optical coherence tomography: erratum	14
GPU-accelerated image registration algorithm in ophthalmic optical coherence tomography	14
Application of fluorescence lifetime imaging microscopy to monitor glucose metabolism in pancreatic islets in vivo	14
Accelerating whole-sample polarization-resolved second harmonic generation imaging in mammary gland tissue via generative adversarial networks	14
Retinal adaptive optics imaging with a pyramid wavefront sensor	14
Ring-segment piezopolymer sensor optimized for cylindrical-wave detection in optical-resolution optoacoustic angiography with extended imaging depth	14
Adversarial training collaborating hybrid convolution-transformer network for automatic identification of reactive lymphocytes in peripheral blood	14
MRI/fluorescence dual-mode probe: its simple preparation method and imaging application in vitro	14
Digital histological staining of tissue slide images from optical coherence microscopy	14
Electronic frequency shifting enables long, variable working distance optical coherence tomography	14
Silver mean sequence in extended depth of focus intraocular lenses: a comparative study of kinoform and stepwise designs	14
Multimodal illumination platform for 3D single-molecule super-resolution imaging throughout mammalian cells	14
Imaging and component analysis of pumpkin stem tissue with simultaneous SF-CARS and TPEF microscopy	14
Quantitative comparison of spinning disk geometries for PAINT based super-resolution microscopy	14
Picosecond laser capture microdissection based on edge catapulting combined with dielectrophoretic force	14
Relative peripheral refraction with accommodation in 6- to 11-year-olds: baseline findings from the Stockholm Myopia Study	14
Design and characterization of a time-domain optical tomography platform for mesoscopic lifetime imaging	14
Amplification of high-intensity pressure waves and cavitation in water using a multi-pulsed laser excitation and black-TiOx optoacoustic lens	14
LED array microscopy system correction method with comprehensive error parameters optimized by phase smoothing criterion	14
Widefield optical coherence tomography by electro-optical modulation	14
Elimination of stripe artifacts in light sheet fluorescence microscopy using an attention-based residual neural network	14
Orbital angular momentum mode fiber force sensing technology based on intensity interrogation	14
Investigation of multiple scattering in space and spatial-frequency domains: with application to the analysis of aberration-diverse optical coherence tomography	14
Performance of focus-tunable presbyopia correction lenses operated using gaze-tracking and LIDAR	14
Numerical calibration method for a multiple spectrometer-based OCT system	14
Challenging the skin pigmentation bias in tissue oximetry via time-domain near-infrared spectroscopy	14
Introduction to the feature Issue “Improving Vision through Intraocular Lenses”: a tribute to Jim Schwiegerling	13
UV surface disinfection in a wearable drug delivery device	13
Non-contact measurement of neck pulses achieved by imaging micro-motions in the neck skin	13
Miniaturized structured illumination microscopy using two 3-axis MEMS micromirrors	13
Simultaneous scattering compensation at multiple points in multi-photon microscopy	13
Three-dimensional oxygen concentration monitoring in hydrogels using low-cost phosphorescence lifetime imaging for tissue engineering	13
ConNeCT: weakly supervised corneal confocal microscopy image inpainting network based on a diffusion model	13
Enhancing image reconstruction in photoacoustic imaging using spatial coherence mean-to-standard-deviation factor beamforming	13
On-line clearing and staining method for the efficient optical imaging of large volume samples at the cellular resolution	13
Microfluidics-based automatic immunofluorescence staining for single-molecule localization microscopy	13
Automated fast label-free quantification of cardiomyocyte dynamics with raw holograms for cardiotoxicity screening	13
Variation of optical properties of mouse brain using an optical clearing agent: experimental and simulation approaches	13
Quantifying UV-induced photodamage for longitudinal live-cell imaging applications of deep-UV microscopy	13
Alternating projection combined with fast gradient projection (FGP-AP) method for intensity-only measurement optical diffraction tomography in LED array microscopy	13
Comparative study of OCTA algorithms with a high-sensitivity multi-contrast Jones matrix OCT system for human skin imaging	13
Femtosecond Er-doped fiber laser source tunable from 872 to 1075 nm for two-photon vision studies in humans	13
Artificial intelligence-augmented, label-free molecular imaging method for tissue identification, cancer diagnosis, and cancer margin detection	13
Spatiotemporal processing in photoplethysmography for skin microcirculatory perfusion imaging	13
Evaluating differences in optical properties of indolent and aggressive murine breast tumors using quantitative diffuse reflectance spectroscopy	13
Soft elastomeric optical fibers for oxygen change measurements of blood and living tissues: a thermoplastic polyurethane assessment	13
Visualization of blood-brain barrier disruption with dual-wavelength high-resolution photoacoustic microscopy	13
Temporally delayed, dual-pulse, dual-wavelength photoacoustic imaging (TD-DP-DW-PAI): advancing capabilities of a commercial light-emitting diode-based photoacoustic imaging system with a pulsed laser	13
Chromatic cues for the sign of defocus in the peripheral retina	13
MulitDeepsurv: Survival analysis of gastric cancer based on deep learning multimodal fusion models	13
HyFormer: a hybrid transformer-CNN architecture for retinal OCT image segmentation	13
X-ray generation by fs-laser processing of biological material	13
Two-photon microendoscope for label-free imaging in stereotactic neurosurgery	13