OOIR: Observatory of International Research

Papers

(The H4-Index of Microbiology Spectrum is 52. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)

Article	Citations
Phylogenetic and genetic evolutionary analyses of the mitochondrial genome of Mastophorus muris in Neodon fuscus from the Qinghai-Tibetan	171
Adaptive laboratory-evolved MRSA with PPEF manifests cross-susceptibility to oxacillin and hypersensitivity to ciprofloxacin	150
LorDist: a novel method for calculating the distance based on functional data analysis with application to longitudinal microbial data	134
Role of NLRP3 in the metabolism of bile acids and gut microbiota in CCl4-induced liver fibrosis	128
Implementation of convolutional neural networks for microbial colony recognition	125
Single-Cell RNA Sequencing Reveals Cellular Heterogeneity and Stage Transition under Temperature Stress in Synchronized Plasmodium falciparum Cells	116
Evaluation of the quickmic system in the rapid diagnosis of Gram-negative bacilli bacteremia	106
Early Neonatal Meconium Does Not Have a Demonstrable Microbiota Determined through Use of Robust Negative Controls with cpn 60-Based Microbiome Profiling	99
The KSHV ORF20 Protein Interacts with the Viral Processivity Factor ORF59 and Promotes Viral Reactivation	96
A benchmarked comparison of software packages for time-lapse image processing of monolayer bacterial population dynamics	94
Investigating oral microbiome dynamics in chronic kidney disease and post-transplantation in continuous culture	89
Insight into the invasion process and immune-protective evaluation of Tp0971, a membrane lipoprotein from Treponema pallidum	89
Infectivity of Symptomatic Patients and Their Contribution for Infectiousness of Mosquitoes following a Membrane Feeding Assay in Ethiopia	84
Biofloc technology significantly reshapes water microbiome and improves survival rates in Japanese eel ( Anguilla japonica )	83
Contribution of Antibiotic Susceptibility Testing and CH Typing Compared to Next-Generation Sequencing for the Diagnosis of Recurrent Urinary Tract Infections Due to Genetically Identical Escherichia	79
H3N2 canine influenza virus-like particle vaccine with great protection in beagle dogs	79
LDHB suppresses the PDCoV proliferation by targeting viral nucleocapsid protein for autophagic degradation	76
In silico and in vitro comparative analysis of 79 Acinetobacter baumannii clinical isolates	75
Interactions of the emerging fungus Candida auris with Acanthamoeba castellanii reveal phenotypic changes with direct implications on the	74
Differential anaerobic oxidation of benzoate in Geotalea daltonii FRC-32	74
A conserved two-component system senses intracellular iron levels and regulates redox balance in Mycobacterium spp.	72
The Small Protein ScrA Influences Staphylococcus aureus Virulence-Related Processes via the SaeRS System	72
Quantitative Proteomic Analysis of Cyanide and Mercury Detoxification by Pseudomonas pseudoalcaligenes CECT 5344	72
PCV2 Uptake by Porcine Monocytes Is Strain-Dependent and Is Associated with Amino Acid Characteristics on the Capsid Surface	70
SFTSV nucleoprotein mediates DNA sensor cGAS degradation to suppress cGAS-dependent antiviral responses	70

Limited Correlation between SARS-CoV-2 Serologic Assays for Identification of High-Titer COVID-19 Convalescent Plasma Using FDA Thresholds	69
2023 Acknowledgment of Microbiology Spectrum Reviewing Editors	65
Investigating the role of MAB_1915 in intrinsic resistance to multiple drugs in Mycobacterium abscessus	64
Preclinical validation of an Escherichia coli O-antigen glycoconjugate for the prevention of serotype O1 invasive disease	64
The scope of antimicrobial resistance in residential aged care facilities determined through analysis of Escherichia coli and the total wastewater resistome	63
Lessons Learned from Implementation of an Interferon Gamma Release Assay to Screen for Latent Tuberculosis Infection in a Large Multicenter Observational Cohort Study in Brazil	63
Extensive Diversity in Escherichia coli Group 3 Capsules Is Driven by Recombination and Plasmid Transfer from Multiple Species	63
Analysis of Transcriptomic Response to SO₂by Oenococcus oeni Growing in Continuous Culture	63
CD86 immunohistochemical staining for the detection of Talaromyces marneffei in lesions	62
Mechanisms of gastrointestinal toxicity in neuromyelitis optica spectrum disorder patients treated with mycophenolate mofetil: insights from a mouse model and human study	61
Differentiation of Classical Swine Fever Virus Virulent and Vaccine Strains by CRISPR/Cas13a	60
Development of a novel pseudovirus-based quality control material for HIV-1 nucleic acid testing and its application in external quality assessment	60
Influence of Sodium Bicarbonate on Wall Teichoic Acid Synthesis and β-Lactam Sensitization in NaHCO ₃ -Responsive and Nonresponsive Methicillin-Resistant Staphylococ	60
Significant increase in the prevalence of Panton–Valentine leukocidin-positive methicillin-resistant Staphylococcus aureus , particularly the USA300 variant ΨUSA300, in	60
Membrane Protein Amuc_1100 Derived from Akkermansia muciniphila Facilitates Lipolysis and Browning via Activating the AC3/PKA/HSL Pathway	60
Dynamics of Humoral Immunity to Myxoma and Rabbit Hemorrhagic Disease Viruses in Wild European Rabbits Assessed by Longitudinal Semiquantitative Serology	59
Isolation and characterization of the new Streptomyces phages Kamino, Geonosis, Abafar, and Scarif infecting a broad range of host species	59
Gut microbiota modulates lung gene expression and metabolism to aid SD rats in adapting to low-pressure hypoxia	59
Clinical Microbial Identification of Severe Oral Infections by MALDI-TOF Mass Spectrometry in Stockholm County: an 11-Year (2010 to 2020) Epidemiological Investigation	58
Role of the NaHCO ₃ Transporter MpsABC in the NaHCO ₃ –β-Lactam-Responsive Phenotype in Methicillin-Resistant Staphylococcus aureu	55
Global Patterns and Climatic Controls of Dust-Associated Microbial Communities	54
Staphylococcus aureus Genomes Harbor Only MpsAB-Like Bicarbonate Transporter but Not Carbonic Anhydrase as Dissolved Inorganic Carbon Supply System	54
Revisiting Species Identification within the Enterobacter cloacae Complex by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry	53
Insights into the Unique Lung Microbiota Profile of Pulmonary Tuberculosis Patients Using Metagenomic Next-Generation Sequencing	53
Comparison of the Performance of the PanBio COVID-19 Antigen Test in SARS-CoV-2 B.1.1.7 (Alpha) Variants versus non-B.1.1.7 Variants	53
Probiotic Formulation VSL#3 Interacts with Mesenchymal Stromal Cells To Protect Dopaminergic Neurons via Centrally and Peripherally Suppressing NOD-Like Receptor Protein 3 Inflammasome-Mediated Inflam	52
Antibody Response to the BA.5 Bivalent Vaccine Shot: a Two-Year Follow-Up Study following Initial COVID-19 mRNA Vaccination	52
Can antimicrobial blue light contribute to resistance development? Genome-wide analysis revealed aBL-protective genes in Escherichia coli	52
Molecular characterization of a novel putative pathogen, Streptococcus nakanoensis sp. nov., isolated from sputum culture	52