Neurophotonics

Article	Citations
Taking the lid off ambitions for optical imaging of the human brain: a conversation with Clare Elwell	110
The Ten Commandments of Everyday Leadership	86
Special Section Guest Editorial: Imaging Neuroimmune, Neuroglial, and Neurovascular Interfaces	57
Important role of the right hemisphere in post-stroke cognitive impairment: a functional near-infrared spectroscopy study	54
Assessment of residual awareness in patients with disorders of consciousness using functional near-infrared spectroscopy–based connectivity: a pilot study	53
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	45
Transport in the brain studied with in vivo two-photon microscopy: the impact of spatial and temporal resolution	36
Review of cocaine-induced brain vascular and cellular function changes measured in vivo with optical imaging	35
Advances in computer-generated holography for targeted neuronal modulation	35
Observation of cortical state–based learning in infants in a functional near-infrared spectroscopy paradigm	34
Evaluation of cerebral microcirculation in a mouse model of systemic inflammation	31
Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats	28
Computing hemodynamic response functions from concurrent spectral fiber-photometry and fMRI data	25
Shedding light on functional near-infrared spectroscopy and open science practices	24
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	23
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	22
Dynamic infrared imaging of cerebrospinal fluid tracer influx into the brain	22
Portable six-channel laser speckle system for simultaneous measurement of cerebral blood flow and volume with potential applications in characterization of brain injury	22
Investigation of effect of modulation frequency on high-density diffuse optical tomography image quality	22
Combined optical coherence tomography and electroretinography system for imaging neurovascular coupling in the human retina	21
Special Section Guest Editorial: Frontiers in Neurophotonics	21
Detectability of hemodynamic oscillations in cerebral cortex through functional near-infrared spectroscopy: a simulation study	21
Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones	21
Altered functional connectivity after pilocarpine-induced seizures revealed by intrinsic optical signals imaging in awake mice	21
Two-point calibration protocol for the Förster Resonance Energy Transfer indicator Pyronic in neurons	20

Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging	19
Imaging the brain in action: a motorized optical rotary joint for wide field fibroscopy in freely moving animals	19
Special Section Guest Editorial: Hybrid Photonic/X Neurointerfaces	17
Maternal anxiety shapes prediction error responses in the infant brain	16
Zika virus encephalitis causes transient reduction of functional cortical connectivity	16
ninjaCap: a fully customizable and 3D printable headgear for functional near-infrared spectroscopy and electroencephalography brain imaging	16
Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy	16
Quantitative simulation of near-infrared light treatment for Alzheimer’s disease using patient-individualized optical-parametric phantoms	16
Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged in vivo	16
Implantable photonic nano-modulators open perspectives for advanced optical interfaces with deep brain areas	16
In vivo volumetric analysis of retinal vascular hemodynamics in mice with spatio-temporal optical coherence tomography	16
Explainable fNIRS-based pain decoding under pharmacological conditions via deep transfer learning approach	15
Unbiased analysis of mouse brain endothelial networks from two- or three-dimensional fluorescence images	14
Acute hypoxia elicits prefrontal oxygenation asymmetry in young adults	14
Preictal neuronal and vascular activity precedes the onset of childhood absence seizure: direct current potential shifts and their correlation with hemodynamic activity	14
All-optical observation on activity-dependent nanoscale dynamics of myelinated axons	14
Imaging of post-synaptic membrane trafficking in neuronal dendrites: progress, limitations, and new developments	14
Semiautomated analysis of an optical ATP indicator in neurons	14
Chasing cortical behavior: designing multiphoton microscopes for imaging neuronal populations in freely moving rodents	14
Controlling the familywise error rate in widefield optical neuroimaging of functional connectivity in mice	13
Emerging panorama of functional near-infrared spectroscopy in Latin America	13
Real-time monitoring of wavelet-based neurovascular coupling in neonates with hypoxic ischemic encephalopathy using an hourly time window	13
Contribution of optical resolution to the spatial precision of two-photon optogenetic photostimulation in vivo	13
Characterizing vascular function in mouse models of Alzheimer’s disease, atherosclerosis, and mixed Alzheimer’s and atherosclerosis	12
Reproducibility of infant fNIRS studies: a meta-analytic approach (Erratum)	12
2023 List of Reviewers	12
Chronic co-implantation of ultraflexible neural electrodes and a cranial window	11
Introduction to the shared near infrared spectroscopy format	11
Pulsatile microvascular cerebral blood flow waveforms change with intracranial compliance and age	11
Light, questions, probes: Valentina Emiliani on combining disciplines for neurophotonics	11
Implantable acousto-optic window for monitoring ultrasound-mediated neuromodulation in vivo	11
On curiosity, neuroscience, and building interdisciplinary bridges: a conversation with Dr. Anna Roe	11
Optical attenuation coefficient decorrelation-based optical coherence tomography angiography for microvascular evaluation of Alzheimer’s disease on mice	10
Machines, mathematics, and modules: the potential to provide real-time metrics for pain under anesthesia	10
Characterization of Mayer-wave oscillations in functional near-infrared spectroscopy using a physiologically informed model of the neural power spectra	10
Consistency of children’s hemodynamic responses during spontaneous speech	10
Comparing synthetic refocusing to deconvolution for the extraction of neuronal calcium transients from light fields	10
Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media	9
How the heterogeneity of the severely injured brain affects hybrid diffuse optical signals: case examples and guidelines	9
Microprisms enable enhanced throughput and resolution for longitudinal tracking of neuronal ensembles in deep brain structures	9
Zebrafish brain atlases: a collective effort for a tiny vertebrate brain	9
Erratum: Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	9
Warriors of Science: Ukraine’s Academic Endeavors	9
Fiber photometry-based investigation of brain function and dysfunction	9
Taste for discovery: a conversation with neuroscientist Serge Charpak	9
Behavioral modeling and neuroimaging of impaired risky decision making in patients with chronic musculoskeletal pain	9
Quantitative analysis of lipofuscin in neurodegenerative diseases using serial sectioning two-photon microscopy and fluorescence lifetime imaging microscopy	9
Continuous blood flow visualization with laser speckle contrast imaging during neurovascular surgery	9
Recent advances in bioluminescent probes for neurobiology	8
Ecological functional near-infrared spectroscopy in mobile children: using short separation channels to correct for systemic contamination during naturalistic neuroimaging	8

DDeep3M+: adaptive enhancement powered weakly supervised learning for neuron segmentation	8
Visible-light optical coherence tomography and its applications	8
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	8
Wide-field fluorescence navigation system for efficient miniature multiphoton imaging in freely behaving animals	8
Systemic physiology augmented functional near-infrared spectroscopy hyperscanning: a first evaluation investigating entrainment of spontaneous activity of brain and body physiology between subjects	8
Brain network evolution in late preterm to term infants: a near-infrared spectroscopy imaging study	7
Neurophotonics beyond the surface: unmasking the brain’s complexity exploiting optical scattering	7
Foundry-fabricated dual-color nanophotonic neural probes for photostimulation and electrophysiological recording	7
Neurovascular coupling over cortical brain areas and resting state network connectivity with and without rigidified carotid artery	7
Recent advances and challenges in the use of CRISPR/Cas9 genome editing for understanding neuronal cell biology	7
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	7
Assaying activity-dependent arteriole and capillary responses in brain slices	7
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	7
Diffuse correlation spectroscopy: current status and future outlook	7
Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	7
Exploring the impact of pre-anastomosis cerebral microcirculation on cerebral hyperperfusion syndrome in superficial temporal artery-middle cerebral artery bypass surgery of moyamoya disease	7
Mid-infrared photoacoustic brain imaging enabled by cascaded gas-filled hollow-core fiber lasers	7
Brain imaging across scales: an interview with Prof. Mark Schnitzer	7
Computer vision–guided open-source active commutator for neural imaging in freely behaving animals	7
Deep learning in fNIRS: a review	7
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	7
2024 List of Reviewers	7
Mind, brain, body, and neuroethics: a conversation with Karen Rommelfanger	6
Intrinsic, widefield optical imaging of hemodynamics in rodent models of Alzheimer’s disease and neurological injury	6
Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension	6
Multimode fiber endoscopes for computational brain imaging	6
Revisiting equivalent optical properties for cerebrospinal fluid to improve diffusion-based modeling accuracy in the brain	6
Label-free photoacoustic computed tomography of visually evoked responses in the primary visual cortex and four subcortical retinorecipient nuclei of anesthetized mice	6
Investigation of functional near-infrared spectroscopy signal quality and development of the hemodynamic phase correlation signal	6
Distinguishing motion artifacts during optical fiber-based in-vivo hemodynamics recordings from brain regions of freely moving rodents	6
Versatile software and hardware combo enabling photon counting acquisition and real-time display for multiplexing, 2D and continuous 3D two-photon imaging applications	6
Hybrid fiber optic-fMRI for multimodal cell-specific recording and manipulation of neural activity in rodents	6
Antibody-based in vivo leukocyte label for two-photon brain imaging in mice	6
Changes in functional neuroimaging measures as novices gain proficiency on the fundamentals of laparoscopic surgery suturing task	5
Parkinson’s disease patients show delayed hemodynamic changes in primary motor cortex in fine motor tasks and decreased resting-state interhemispheric functional connectivity: a functional near-infrar	5
Population imaging of internal state circuits relevant to psychiatric disease: a review	5
2022 List of Reviewers	5
Behavioral and physiological monitoring for awake neurovascular coupling experiments: a how-to guide	5
Low-cost physiology and behavioral monitor for intravital imaging in small mammals	5
Feasibility study of functional near-infrared spectroscopy in the ventral visual pathway for real-life applications	5
Adaptive optics, microscopy, and beyond: an interview with Professor Na Ji	5
Cerebrovascular impedance estimation with near-infrared and diffuse correlation spectroscopy	5
Functional near-infrared spectroscopy-based diagnosis support system for distinguishing between mild and severe depression using machine learning approaches	5
It takes two (seconds): decreasing encoding time for two-choice functional near-infrared spectroscopy brain–computer interface communication	5
Spatiotemporal patterns of spontaneous brain activity: a mini-review	5
Real-time tracking of brain oxygen gradients and blood flow during functional activation	5
Modulation of neuronal dynamics by sustained and activity-dependent continuous-wave near-infrared laser stimulation	5
Two-photon optogenetics-based assessment of neuronal connectivity in healthy and chronic hypoperfusion mice	5
Functional near-infrared spectroscopy neurofeedback of dorsolateral prefrontal cortex enhances human spatial working memory	5
Improving neuroimaging headgear placement robustness using facial-landmark-guided augmented reality	5
Conceptual framework for neuronal ensemble identification and manipulation related to behavior using calcium imaging	5
Special Section Guest Editorial: Computational Approaches for Neuroimaging	5
Constraining the many-worlds interpretation of computational neuroscience with neurophotonics: a conversation with Gaute Einevoll	5
Co-localized optode-electrode design for multimodal functional near infrared spectroscopy and electroencephalography	5
Optimal combinations of fluorescent vessel labeling and tissue clearing methods for three-dimensional visualization of vasculature	5
Functional specialization for language processing in inferior frontal regions during early childhood: evidence from functional near-infrared spectroscopy individual functional channels of interest app	4
The fNIRS glossary project: a consensus-based resource for functional near-infrared spectroscopy terminology	4
Method for optimizing imaging parameters to record neuronal and cellular activity at depth with bioluminescence	4
A low-cost FPGA-based approach for pile-up corrected high-speed in vivo FLIM imaging	4
Seizure event detection using intravital two-photon calcium imaging data	4
Repetitive transcranial magnetic stimulation increases synaptic plasticity of cortical axons in the APP/PS1 amyloidosis mouse model	4
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	4
HyperOptoNet: a MATLAB-based toolbox for inter-brain neuronal synchrony analysis using fNIRS hyperscanning	4
Potential of plasmonics and nanoscale light–matter interactions for the next generation of optical neural interfaces	4
Optical constraints on two-photon voltage imaging	4
High-density multidistance fNIRS enhances detection of brain activity during a word-color Stroop task	4
Characterizing the blood–brain barrier and gut barrier with super-resolution imaging: opportunities and challenges	4
Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geo	4
devfOLD: a toolbox for designing age-specific fNIRS channel placement	4
Psychedelics and fNIRS neuroimaging: exploring new opportunities	4
Study of the brain function characteristics in children with cerebral palsy during walking using functional near-infrared spectroscopy	4
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	4
Polarization optical coherence tomography optoretinography: verifying light-induced photoreceptor outer segment shrinkage and subretinal space expansion	4
Automatic and label-free detection of meningioma in dura mater using the combination of multiphoton microscopy and image analysis	4
Cortical functional connectivity and topology based on complex network graph theory analysis during acute pain stimuli	4
BioLuminescent OptoGenetics in the choroid plexus: integrated opto- and chemogenetic control in vivo	4
Obtaining artifact-corrected signals in fiber photometry via isosbestic signals, robust regression, and dF/F calculations	4
Effects of red blood cell transfusion on cerebral hemodynamics of preterm neonates	4
Linking brain activation to clinical outcomes: an fNIRS study in cochlear implant users and normal hearing individuals	4
Multifocal microscopy for functional imaging of neural systems	4

Capturing a rising star: the emerging role of astrocytes in neural circuit wiring and plasticity–lessons from the visual system	3
Cerebral blood flow monitoring using a deep learning implementation of the two-layer diffuse correlation spectroscopy analytical model with a 512 × 512 SPAD array	3
Contractile apparatus in CNS capillary pericytes	3
Expansion microscopy reveals neural circuit organization in genetic animal models	3
Enhanced synaptic protein visualization by multicolor super-resolution expansion microscopy	3
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	3
Comparison of diffuse correlation spectroscopy, interferometric diffusing wave spectroscopy, and speckle contrast optical spectroscopy for blood flow monitoring	3
Semi-automated analysis of cerebral capillary red blood cell velocities allows modeling of transit time distribution after experimental subarachnoid hemorrhage in mice	3
Connecting the dots between cell populations, whole-brain activity, and behavior	3
Linking brain activity across scales with simultaneous opto- and electrophysiology	3
Stimulation intensities influence the effects of spinal cord stimulation in disorders of consciousness: an fNIRS study	3
Fiber-based in vivo imaging: unveiling avenues for exploring mechanisms of synaptic plasticity and neuronal adaptations underlying behavior	3
Reproducibility of infant fNIRS studies: a meta-analytic approach	3
Deep learning-based motion artifact removal in functional near-infrared spectroscopy	3
NiReject: toward automated bad channel detection in functional near-infrared spectroscopy	3
Wearable, high-density fNIRS and diffuse optical tomography technologies: a perspective	3
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	3
Introduction to the Special Issue “Understanding Brain Disease with Live Imaging”	3
Distribution of spine classes shows intra-neuronal dendritic heterogeneity in mouse cortex	3
Special Section Guest Editorial: Molecular Neurophotonics	3
Reducing false discoveries in resting-state functional connectivity using short channel correction: an fNIRS study	3
Toolbox for studying neurovascular coupling in vivo, with a focus on vascular activity and calcium dynamics in astrocytes	3
Techniques for visualizing fibroblast-vessel interactions in the developing and adult CNS	3
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	3
FiPhA: an open-source platform for fiber photometry analysis	3
fNIRS brain measures of ongoing nociception during surgical incisions under anesthesia	3
Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?	3
Blue-shifted genetically encoded Ca2+ indicator with enhanced two-photon absorption	2
Emerging technologies toward the integration of multiple functionalities on non-planar implantable neurophotonics probes	2
Illuminating neurodegeneration: a future perspective on near-infrared spectroscopy in dementia research	2
Evaluation of compact pulsed lasers for two-photon microscopy using a simple method for measuring two-photon excitation efficiency	2
Developing customized NIRS-EEG for infant sleep research: methodological considerations	2
DeepVID v2: self-supervised denoising with decoupled spatiotemporal enhancement for low-photon voltage imaging	2
Assessing the relationship between the cerebral metabolic rate of oxygen and the oxidation state of cytochrome-c-oxidase	2
Cerebrovascular reactivity to carbon dioxide tension in newborns: data from combined time-resolved near-infrared spectroscopy and diffuse correlation spectroscopy	2
Vertebrate behavioral thermoregulation: knowledge and future directions	2
Intra-subject test-retest reliability for auditory-evoked functional near-infrared spectroscopy responses: effects of systemic physiology correction	2
Transcranial photobiomodulation (808 nm) attenuates pentylenetetrazole-induced seizures by suppressing hippocampal neuroinflammation, astrogliosis, and microgliosis in peripubertal rats	2
Motion artifact correction for resting-state neonatal functional near-infrared spectroscopy through adaptive estimation of physiological oscillation denoising	2
Anisotropic light propagation in human brain white matter	2
Robust photogrammetric scalp morphology estimation for functional optical neuroimaging	2
Navigating neurophotonics, words of wisdom: an interview with Professor David Kleinfeld	2
Characterization of red fluorescent reporters for dual-color in vivo three-photon microscopy	2
Test-retest reliability of functional near-infrared spectroscopy during a finger-tapping and postural task in healthy older adults	2
Arterial-wall origin and transient dynamics of flow- and vaso-motion activities in the awake mouse brain revealed by laser speckle contrast imaging	2
Sensitive and specific fNIRS-based approach for awareness detection in disorders of consciousness: proof of principle in healthy adults	2
Brain-wide 3D neuron detection and mapping with deep learning	2
Addressing annotation and data scarcity when designing machine learning strategies for neurophotonics	2
Widefield in vivo imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination	2
Depth-resolved fiber photometry of amyloid plaque signals in freely behaving Alzheimer’s disease mice	2
Review on data analysis methods for mesoscale neural imaging in vivo	2
Millimetric scale two-photon Bessel-Gauss beam light sheet microscopy with three-axis isotropic resolution using an axicon lens	2
Photon transport through the entire adult human head	2
Special Section Guest Editorial: Thirty Years of Functional Near-Infrared Spectroscopy	2
Human brain tissue identification using coherent anti-Stokes Raman scattering spectroscopy and diffuse reflectance spectroscopy for deep brain stimulation surgery	2
Self-administered transcranial direct current stimulation treatment of knee osteoarthritis alters pain-related fNIRS connectivity networks	2