Neurophotonics

Article	Citations
Taking the lid off ambitions for optical imaging of the human brain: a conversation with Clare Elwell	115
The Ten Commandments of Everyday Leadership	94
Important role of the right hemisphere in post-stroke cognitive impairment: a functional near-infrared spectroscopy study	58
Special Section Guest Editorial: Imaging Neuroimmune, Neuroglial, and Neurovascular Interfaces	58
Review of cocaine-induced brain vascular and cellular function changes measured in vivo with optical imaging	57
Advances in computer-generated holography for targeted neuronal modulation	46
Phantom for standardization in functional near-infrared spectroscopy, part 1: implementation and usage	40
Observation of cortical state–based learning in infants in a functional near-infrared spectroscopy paradigm	38
Computing hemodynamic response functions from concurrent spectral fiber-photometry and fMRI data	37
Fluorescent sensors for intracellular signaling in the brain: imaging neurons, glia, and vascular cells	37
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	33
Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats	29
Evaluation of cerebral microcirculation in a mouse model of systemic inflammation	27
Rapid axially scanned and de-scanned line-scan confocal microscopy with a tunable acoustic gradient index of refraction lens for high-speed volumetric in vivo imaging	26
Transport in the brain studied with in vivo two-photon microscopy: the impact of spatial and temporal resolution	25
Assessment of residual awareness in patients with disorders of consciousness using functional near-infrared spectroscopy–based connectivity: a pilot study	24
Shedding light on functional near-infrared spectroscopy and open science practices	24
Dynamic infrared imaging of cerebrospinal fluid tracer influx into the brain	23
Portable six-channel laser speckle system for simultaneous measurement of cerebral blood flow and volume with potential applications in characterization of brain injury	23
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	22
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	22
Detectability of hemodynamic oscillations in cerebral cortex through functional near-infrared spectroscopy: a simulation study	21
Cerebral blood flow and energy demand: imaging insights into neurovascular function	21
Altered functional connectivity after pilocarpine-induced seizures revealed by intrinsic optical signals imaging in awake mice	21
Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones	21

Special Section Guest Editorial: Frontiers in Neurophotonics	20
Two-point calibration protocol for the Förster Resonance Energy Transfer indicator Pyronic in neurons	19
Combined optical coherence tomography and electroretinography system for imaging neurovascular coupling in the human retina	19
Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging	19
Implantable photonic nano-modulators open perspectives for advanced optical interfaces with deep brain areas	17
Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged in vivo	17
Special Section Guest Editorial: Hybrid Photonic/X Neurointerfaces	17
Maternal anxiety shapes prediction error responses in the infant brain	17
Imaging the brain in action: a motorized optical rotary joint for wide field fibroscopy in freely moving animals	17
In vivo volumetric analysis of retinal vascular hemodynamics in mice with spatio-temporal optical coherence tomography	16
Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy	15
Zika virus encephalitis causes transient reduction of functional cortical connectivity	15
Improving interference control without conflict exposure: prefrontal fNIRS-decoded neurofeedback training	15
Explainable fNIRS-based pain decoding under pharmacological conditions via deep transfer learning approach	15
Quantitative simulation of near-infrared light treatment for Alzheimer’s disease using patient-individualized optical-parametric phantoms	15
Imaging of post-synaptic membrane trafficking in neuronal dendrites: progress, limitations, and new developments	14
Preictal neuronal and vascular activity precedes the onset of childhood absence seizure: direct current potential shifts and their correlation with hemodynamic activity	14
ninjaCap: a fully customizable and 3D printable headgear for functional near-infrared spectroscopy and electroencephalography brain imaging	14
Contribution of optical resolution to the spatial precision of two-photon optogenetic photostimulation in vivo	14
Acute hypoxia elicits prefrontal oxygenation asymmetry in young adults	13
Emerging panorama of functional near-infrared spectroscopy in Latin America	13
All-optical observation on activity-dependent nanoscale dynamics of myelinated axons	13
Unbiased analysis of mouse brain endothelial networks from two- or three-dimensional fluorescence images	13
Chasing cortical behavior: designing multiphoton microscopes for imaging neuronal populations in freely moving rodents	13
Real-time monitoring of wavelet-based neurovascular coupling in neonates with hypoxic ischemic encephalopathy using an hourly time window	13
2023 List of Reviewers	12
Controlling the familywise error rate in widefield optical neuroimaging of functional connectivity in mice	12
Secret ingredients that can boost the flavor of your ideas	12
Semiautomated analysis of an optical ATP indicator in neurons	12
Pulsatile microvascular cerebral blood flow waveforms change with intracranial compliance and age	11
On curiosity, neuroscience, and building interdisciplinary bridges: a conversation with Dr. Anna Roe	11
Chronic co-implantation of ultraflexible neural electrodes and a cranial window	11
Implantable acousto-optic window for monitoring ultrasound-mediated neuromodulation in vivo	11
Reproducibility of infant fNIRS studies: a meta-analytic approach (Erratum)	11
Tone disruptions in Mandarin post-stroke aphasia: an fNIRS study on Broca’s area using the auditory oddball paradigm	10
Optical attenuation coefficient decorrelation-based optical coherence tomography angiography for microvascular evaluation of Alzheimer’s disease on mice	10
Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media	10
Light, questions, probes: Valentina Emiliani on combining disciplines for neurophotonics	10
Characterizing vascular function in mouse models of Alzheimer’s disease, atherosclerosis, and mixed Alzheimer’s and atherosclerosis	10
Erratum: Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	10
Introduction to the shared near infrared spectroscopy format	10
Machines, mathematics, and modules: the potential to provide real-time metrics for pain under anesthesia	10
Consistency of children’s hemodynamic responses during spontaneous speech	10
Comparing synthetic refocusing to deconvolution for the extraction of neuronal calcium transients from light fields	10
Taste for discovery: a conversation with neuroscientist Serge Charpak	9
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	9
Behavioral modeling and neuroimaging of impaired risky decision making in patients with chronic musculoskeletal pain	9
Microprisms enable enhanced throughput and resolution for longitudinal tracking of neuronal ensembles in deep brain structures	9
Warriors of Science: Ukraine’s Academic Endeavors	9
Neurophotonics beyond the surface: unmasking the brain’s complexity exploiting optical scattering	8

Zebrafish brain atlases: a collective effort for a tiny vertebrate brain	8
Recent advances in bioluminescent probes for neurobiology	8
Brain imaging across scales: an interview with Prof. Mark Schnitzer	8
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	8
Wide-field fluorescence navigation system for efficient miniature multiphoton imaging in freely behaving animals	8
Continuous blood flow visualization with laser speckle contrast imaging during neurovascular surgery	8
Systemic physiology augmented functional near-infrared spectroscopy hyperscanning: a first evaluation investigating entrainment of spontaneous activity of brain and body physiology between subjects	8
Diffuse correlation spectroscopy: current status and future outlook	8
DDeep3M+: adaptive enhancement powered weakly supervised learning for neuron segmentation	8
Quantitative analysis of lipofuscin in neurodegenerative diseases using serial sectioning two-photon microscopy and fluorescence lifetime imaging microscopy	8
Deep learning in fNIRS: a review	7
Brain network evolution in late preterm to term infants: a near-infrared spectroscopy imaging study	7
Exploring the impact of pre-anastomosis cerebral microcirculation on cerebral hyperperfusion syndrome in superficial temporal artery-middle cerebral artery bypass surgery of moyamoya disease	7
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	7
Computer vision–guided open-source active commutator for neural imaging in freely behaving animals	7
Ecological functional near-infrared spectroscopy in mobile children: using short separation channels to correct for systemic contamination during naturalistic neuroimaging	7
Foundry-fabricated dual-color nanophotonic neural probes for photostimulation and electrophysiological recording	7
Visible-light optical coherence tomography and its applications	7
Recent advances and challenges in the use of CRISPR/Cas9 genome editing for understanding neuronal cell biology	7
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	7
Mid-infrared photoacoustic brain imaging enabled by cascaded gas-filled hollow-core fiber lasers	7
Fiber photometry-based investigation of brain function and dysfunction	7
Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	7
Neurovascular coupling over cortical brain areas and resting state network connectivity with and without rigidified carotid artery	7
How the heterogeneity of the severely injured brain affects hybrid diffuse optical signals: case examples and guidelines	7
Assaying activity-dependent arteriole and capillary responses in brain slices	7
2024 List of Reviewers	7
Label-free photoacoustic computed tomography of visually evoked responses in the primary visual cortex and four subcortical retinorecipient nuclei of anesthetized mice	6
Distinguishing motion artifacts during optical fiber-based in-vivo hemodynamics recordings from brain regions of freely moving rodents	6
Revisiting equivalent optical properties for cerebrospinal fluid to improve diffusion-based modeling accuracy in the brain	6
Mind, brain, body, and neuroethics: a conversation with Karen Rommelfanger	6
Constraining the many-worlds interpretation of computational neuroscience with neurophotonics: a conversation with Gaute Einevoll	6
Versatile software and hardware combo enabling photon counting acquisition and real-time display for multiplexing, 2D and continuous 3D two-photon imaging applications	6
Multimode fiber endoscopes for computational brain imaging	6
Investigation of functional near-infrared spectroscopy signal quality and development of the hemodynamic phase correlation signal	6
Antibody-based in vivo leukocyte label for two-photon brain imaging in mice	6
Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension	6
Intrinsic, widefield optical imaging of hemodynamics in rodent models of Alzheimer’s disease and neurological injury	6
Hybrid fiber optic-fMRI for multimodal cell-specific recording and manipulation of neural activity in rodents	6
NIRS frequency analysis to evaluate cerebrovascular reactivity after acute brain injury	6
Adaptive optics, microscopy, and beyond: an interview with Professor Na Ji	6
Feasibility study of functional near-infrared spectroscopy in the ventral visual pathway for real-life applications	5
Modulation of neuronal dynamics by sustained and activity-dependent continuous-wave near-infrared laser stimulation	5
Automatic and label-free detection of meningioma in dura mater using the combination of multiphoton microscopy and image analysis	5
Functional near-infrared spectroscopy-based diagnosis support system for distinguishing between mild and severe depression using machine learning approaches	5
Population imaging of internal state circuits relevant to psychiatric disease: a review	5
Spatiotemporal patterns of spontaneous brain activity: a mini-review	5
Co-localized optode-electrode design for multimodal functional near infrared spectroscopy and electroencephalography	5
Real-time tracking of brain oxygen gradients and blood flow during functional activation	5
Low-cost physiology and behavioral monitor for intravital imaging in small mammals	5
2022 List of Reviewers	5
Behavioral and physiological monitoring for awake neurovascular coupling experiments: a how-to guide	5
Polarization optical coherence tomography optoretinography: verifying light-induced photoreceptor outer segment shrinkage and subretinal space expansion	5
Significant interactions in infant operculum regions when exposed to a bilingual environment: a resting-state fNIRS study	5
Changes in functional neuroimaging measures as novices gain proficiency on the fundamentals of laparoscopic surgery suturing task	5
Cerebrovascular impedance estimation with near-infrared and diffuse correlation spectroscopy	5
Two-photon optogenetics-based assessment of neuronal connectivity in healthy and chronic hypoperfusion mice	5
Functional near-infrared spectroscopy neurofeedback of dorsolateral prefrontal cortex enhances human spatial working memory	5
Parkinson’s disease patients show delayed hemodynamic changes in primary motor cortex in fine motor tasks and decreased resting-state interhemispheric functional connectivity: a functional near-infrar	5
Special Section Guest Editorial: Computational Approaches for Neuroimaging	5
It takes two (seconds): decreasing encoding time for two-choice functional near-infrared spectroscopy brain–computer interface communication	5
Conceptual framework for neuronal ensemble identification and manipulation related to behavior using calcium imaging	5
Improving neuroimaging headgear placement robustness using facial-landmark-guided augmented reality	5
Optimal combinations of fluorescent vessel labeling and tissue clearing methods for three-dimensional visualization of vasculature	5
Cortical functional connectivity and topology based on complex network graph theory analysis during acute pain stimuli	4
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	4
Potential of plasmonics and nanoscale light–matter interactions for the next generation of optical neural interfaces	4
Optical constraints on two-photon voltage imaging	4
Repetitive transcranial magnetic stimulation increases synaptic plasticity of cortical axons in the APP/PS1 amyloidosis mouse model	4
Stimulation intensities influence the effects of spinal cord stimulation in disorders of consciousness: an fNIRS study	4
Fiber-based in vivo imaging: unveiling avenues for exploring mechanisms of synaptic plasticity and neuronal adaptations underlying behavior	4
Characterizing the blood–brain barrier and gut barrier with super-resolution imaging: opportunities and challenges	4
Psychedelics and fNIRS neuroimaging: exploring new opportunities	4
Multifocal microscopy for functional imaging of neural systems	4
The fNIRS glossary project: a consensus-based resource for functional near-infrared spectroscopy terminology	4
Functional specialization for language processing in inferior frontal regions during early childhood: evidence from functional near-infrared spectroscopy individual functional channels of interest app	4
Obtaining artifact-corrected signals in fiber photometry via isosbestic signals, robust regression, and dF/F calculations	4
Linking brain activity across scales with simultaneous opto- and electrophysiology	4
Special Section Guest Editorial: Molecular Neurophotonics	4
A low-cost FPGA-based approach for pile-up corrected high-speed in vivo FLIM imaging	4

Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geo	4
Linking brain activation to clinical outcomes: an fNIRS study in cochlear implant users and normal hearing individuals	4
Study of the brain function characteristics in children with cerebral palsy during walking using functional near-infrared spectroscopy	4
High-density multidistance fNIRS enhances detection of brain activity during a word-color Stroop task	4
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	4
Effects of red blood cell transfusion on cerebral hemodynamics of preterm neonates	4
Capturing a rising star: the emerging role of astrocytes in neural circuit wiring and plasticity–lessons from the visual system	4
Seizure event detection using intravital two-photon calcium imaging data	4
Method for optimizing imaging parameters to record neuronal and cellular activity at depth with bioluminescence	4
BioLuminescent OptoGenetics in the choroid plexus: integrated opto- and chemogenetic control in vivo	4
HyperOptoNet: a MATLAB-based toolbox for inter-brain neuronal synchrony analysis using fNIRS hyperscanning	4
Reducing false discoveries in resting-state functional connectivity using short channel correction: an fNIRS study	3
Cerebral blood flow monitoring using a deep learning implementation of the two-layer diffuse correlation spectroscopy analytical model with a 512 × 512 SPAD array	3
Distribution of spine classes shows intra-neuronal dendritic heterogeneity in mouse cortex	3
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	3
Intra-subject test-retest reliability for auditory-evoked functional near-infrared spectroscopy responses: effects of systemic physiology correction	3
Brain-wide 3D neuron detection and mapping with deep learning	3
Toolbox for studying neurovascular coupling in vivo, with a focus on vascular activity and calcium dynamics in astrocytes	3
Connecting the dots between cell populations, whole-brain activity, and behavior	3
Enhanced synaptic protein visualization by multicolor super-resolution expansion microscopy	3
Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?	3
How to design real-world functional near-infrared spectroscopy studies: a primer	3
Semi-automated analysis of cerebral capillary red blood cell velocities allows modeling of transit time distribution after experimental subarachnoid hemorrhage in mice	3
Reproducibility of infant fNIRS studies: a meta-analytic approach	3
Contractile apparatus in CNS capillary pericytes	3
Wearable, high-density fNIRS and diffuse optical tomography technologies: a perspective	3
Motion artifact correction for resting-state neonatal functional near-infrared spectroscopy through adaptive estimation of physiological oscillation denoising	3
Expansion microscopy reveals neural circuit organization in genetic animal models	3
FiPhA: an open-source platform for fiber photometry analysis	3
Techniques for visualizing fibroblast-vessel interactions in the developing and adult CNS	3
NiReject: toward automated bad channel detection in functional near-infrared spectroscopy	3
fNIRS brain measures of ongoing nociception during surgical incisions under anesthesia	3
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	3
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	3
Introduction to the Special Issue “Understanding Brain Disease with Live Imaging”	3
Blue-shifted genetically encoded Ca2+ indicator with enhanced two-photon absorption	3
Comparison of diffuse correlation spectroscopy, interferometric diffusing wave spectroscopy, and speckle contrast optical spectroscopy for blood flow monitoring	3
Self-administered transcranial direct current stimulation treatment of knee osteoarthritis alters pain-related fNIRS connectivity networks	3
Deep learning-based motion artifact removal in functional near-infrared spectroscopy	3