Neurophotonics

Article	Citations
Polarization optical coherence tomography optoretinography: verifying light-induced photoreceptor outer segment shrinkage and subretinal space expansion	85
Computing hemodynamic response functions from concurrent spectral fiber-photometry and fMRI data	64
Evaluation of cerebral microcirculation in a mouse model of systemic inflammation	61
Optical constraints on two-photon voltage imaging	43
Optical imaging and spectroscopy for the study of the human brain: status report	37
Encoding of self-initiated actions in axon terminals of the mesocortical pathway	36
Toward dynamic, anisotropic, high-resolution, and functional measurement in the brain extracellular space	35
Taking the lid off ambitions for optical imaging of the human brain: a conversation with Clare Elwell	33
Characterization of red fluorescent reporters for dual-color in vivo three-photon microscopy	33
Quantitative evaluation of biomechanical properties of optic nerve head by using acoustic radiation force optical coherence elastography	26
2022 List of Reviewers	25
The Ten Commandments of Everyday Leadership	24
Special Section Guest Editorial: Imaging Neuroimmune, Neuroglial, and Neurovascular Interfaces	22
Special Section Guest Editorial: Computational Approaches for Neuroimaging	22
Welcome New Members of the Neurophotonics Editorial Board!	21
Light, questions, probes: Valentina Emiliani on combining disciplines for neurophotonics	21
Photonic neural probe enabled microendoscopes for light-sheet light-field computational fluorescence brain imaging	21
2021 List of Reviewers	20
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	19
Potential of plasmonics and nanoscale light–matter interactions for the next generation of optical neural interfaces	19
Navigating neurophotonics, words of wisdom: an interview with Professor David Kleinfeld	18
Automatic and label-free detection of meningioma in dura mater using the combination of multiphoton microscopy and image analysis	18
Important role of the right hemisphere in post-stroke cognitive impairment: a functional near-infrared spectroscopy study	18
Machines, mathematics, and modules: the potential to provide real-time metrics for pain under anesthesia	17
Characterization of Mayer-wave oscillations in functional near-infrared spectroscopy using a physiologically informed model of the neural power spectra	17

Applications of near-infrared spectroscopy in neurocritical care	16
Engineering luminopsins with improved coupling efficiencies	16
iVR-fNIRS: studying brain functions in a fully immersive virtual environment	16
Assessment of residual awareness in patients with disorders of consciousness using functional near-infrared spectroscopy–based connectivity: a pilot study	16
Fiberoptic array for multiple channel infrared neural stimulation of the brain	15
How much do time-domain functional near-infrared spectroscopy (fNIRS) moments improve estimation of brain activity over traditional fNIRS?	15
Widefield in vivo imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination	14
Millimetric scale two-photon Bessel-Gauss beam light sheet microscopy with three-axis isotropic resolution using an axicon lens	14
Evaluation of compact pulsed lasers for two-photon microscopy using a simple method for measuring two-photon excitation efficiency	12
Optical attenuation coefficient decorrelation-based optical coherence tomography angiography for microvascular evaluation of Alzheimer’s disease on mice	12
Advances in computer-generated holography for targeted neuronal modulation	12
Developing customized NIRS-EEG for infant sleep research: methodological considerations	12
Review on data analysis methods for mesoscale neural imaging in vivo	12
Assessing the relationship between the cerebral metabolic rate of oxygen and the oxidation state of cytochrome-c-oxidase	11
DeepVID v2: self-supervised denoising with decoupled spatiotemporal enhancement for low-photon voltage imaging	11
Using near-infrared spectroscopy and a random forest regressor to estimate intracranial pressure	11
Comparing synthetic refocusing to deconvolution for the extraction of neuronal calcium transients from light fields	11
Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats	11
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	10
Current opinions on the present and future use of functional near-infrared spectroscopy in psychiatry	10
Study of the brain function characteristics in children with cerebral palsy during walking using functional near-infrared spectroscopy	10
Seizure event detection using intravital two-photon calcium imaging data	9
Dynamic infrared imaging of cerebrospinal fluid tracer influx into the brain	9
Behavioral modeling and neuroimaging of impaired risky decision making in patients with chronic musculoskeletal pain	9
BioLuminescent OptoGenetics in the choroid plexus: integrated opto- and chemogenetic control in vivo	9
Method for optimizing imaging parameters to record neuronal and cellular activity at depth with bioluminescence	9
Characterizing the blood–brain barrier and gut barrier with super-resolution imaging: opportunities and challenges	9
Rebellion, curiosity, and perseverance: a conversation with Maria Angela Franceschini	8
Diversity is our Strength	8
Fiber photometry-based investigation of brain function and dysfunction	8
Erratum: Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	8
Consistency of children’s hemodynamic responses during spontaneous speech	8
Depth-targeted intracortical microstroke by two-photon photothrombosis in rodent brain	8
Psychedelics and fNIRS neuroimaging: exploring new opportunities	8
Warriors of Science: Ukraine’s Academic Endeavors	8
Upcoming Neurophotonics Status Report	8
Two-dimensional electro-optical multiphoton microscopy	7
Zebrafish brain atlases: a collective effort for a tiny vertebrate brain	7
HyperOptoNet: a MATLAB-based toolbox for inter-brain neuronal synchrony analysis using fNIRS hyperscanning	7
Toward peripheral nerve mechanical characterization using Brillouin imaging spectroscopy	7
DDeep3M+: adaptive enhancement powered weakly supervised learning for neuron segmentation	7
Recent advances in bioluminescent probes for neurobiology	7
Low-cost, smartphone-based instant three-dimensional registration system for infant functional near-infrared spectroscopy applications	7
Taste for discovery: a conversation with neuroscientist Serge Charpak	7
Comparing the segmentation of quantitative phase images of neurons using convolutional neural networks trained on simulated and augmented imagery	7
Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media	6
Shining light on the noradrenergic system	6
Correlating functional near-infrared spectroscopy with underlying cortical regions of 0-, 1-, and 2-year-olds using theoretical light propagation analysis	6
Advancing the path to in-vivo imaging in freely moving mice via multimode-multicore fiber based holographic endoscopy	6
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	6

Neurophotonics beyond the surface: unmasking the brain’s complexity exploiting optical scattering	6
Early changes in spatiotemporal dynamics of remapped circuits and global networks predict functional recovery after stroke in mice	6
Shedding light on functional near-infrared spectroscopy and open science practices	6
Parallel factor analysis for multidimensional decomposition of functional near-infrared spectroscopy data	6
Multifocal microscopy for functional imaging of neural systems	6
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	6
Effects of red blood cell transfusion on cerebral hemodynamics of preterm neonates	6
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	6
Model-based correction of rapid thermal confounds in fluorescence neuroimaging of targeted perturbation	6
Can pain under anesthesia be measured? Pain-related brain function using functional near-infrared spectroscopy during knee surgery	6
Microprisms enable enhanced throughput and resolution for longitudinal tracking of neuronal ensembles in deep brain structures	6
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	5
Cerebral baseline optical and hemodynamic properties in pediatric population: a large cohort time-domain near-infrared spectroscopy study	5
Portable six-channel laser speckle system for simultaneous measurement of cerebral blood flow and volume with potential applications in characterization of brain injury	5
Influence of oversimplifying the head anatomy on cerebral blood flow measurements with diffuse correlation spectroscopy	5
Continuous blood flow visualization with laser speckle contrast imaging during neurovascular surgery	5
Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geo	5
Multisensory naturalistic decoding with high-density diffuse optical tomography	5
Disentangling the impact of motion artifact correction algorithms on functional near-infrared spectroscopy–based brain network analysis	5
Simple methodology to visualize whole-brain microvasculature in three dimensions	5
Diffuse correlation spectroscopy: current status and future outlook	5
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	5
Programmable scanning diffuse speckle contrast imaging of cerebral blood flow	5
How the heterogeneity of the severely injured brain affects hybrid diffuse optical signals: case examples and guidelines	5
Obtaining artifact-corrected signals in fiber photometry via isosbestic signals, robust regression, and dF/F calculations	5
High throughput detection of capillary stalling events with Bessel beam two-photon microscopy	5
Standardized 3D test object for multi-camera calibration during animal pose capture	4
Two-in-one system and behavior-specific brain synchrony during goal-free cooperative creation: an analytical approach combining automated behavioral classification and the event-related generalized li	4
Understanding the nervous system: lessons from Frontiers in Neurophotonics	4
Altered functional connectivity after pilocarpine-induced seizures revealed by intrinsic optical signals imaging in awake mice	4
Wavelength-swept spontaneous Raman spectroscopy system improves fiber-based collection efficiency for whole brain tissue classification	4
Systemic physiology augmented functional near-infrared spectroscopy hyperscanning: a first evaluation investigating entrainment of spontaneous activity of brain and body physiology between subjects	4
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	4
Deep learning in fNIRS: a review	4
Pulse train gating to improve signal generation for in vivo two-photon fluorescence microscopy	4
Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?	4
Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging	4
Functional near-infrared spectroscopy-based prefrontal cortex oxygenation during working memory tasks in sickle cell disease	4
devfOLD: a toolbox for designing age-specific fNIRS channel placement	4
Closed-loop experiments and brain machine interfaces with multiphoton microscopy	4
Brain space image reconstruction of functional near-infrared spectroscopy using a Bayesian adaptive fused sparse overlapping group lasso model	4
Special Section Guest Editorial: Frontiers in Neurophotonics	4
Investigating developmental changes in scalp-to-cortex correspondence using diffuse optical tomography sensitivity in infancy	4
“There’s plenty of room at the bottom”: deep brain imaging with holographic endo-microscopy	4
Ecological functional near-infrared spectroscopy in mobile children: using short separation channels to correct for systemic contamination during naturalistic neuroimaging	4
Investigation of effect of modulation frequency on high-density diffuse optical tomography image quality	4
Exploring the impact of pre-anastomosis cerebral microcirculation on cerebral hyperperfusion syndrome in superficial temporal artery-middle cerebral artery bypass surgery of moyamoya disease	3
Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones	3
Assaying activity-dependent arteriole and capillary responses in brain slices	3
Linking brain activity across scales with simultaneous opto- and electrophysiology	3
Pupil engineering for extended depth-of-field imaging in a fluorescence miniscope	3
Chronic multiscale resolution of mouse brain networks using combined mesoscale cortical imaging and subcortical fiber photometry	3
Performance comparison of systemic activity correction in functional near-infrared spectroscopy for methods with and without short distance channels	3
Comparison of functional activation responses from the auditory cortex derived using multi-distance frequency domain and continuous wave near-infrared spectroscopy	3
Recent advances and challenges in the use of CRISPR/Cas9 genome editing for understanding neuronal cell biology	3
Blood vessel tail artifacts suppression in optical coherence tomography angiography	3
Contractile apparatus in CNS capillary pericytes	3
fNIRS brain measures of ongoing nociception during surgical incisions under anesthesia	3
Fiber-based in vivo imaging: unveiling avenues for exploring mechanisms of synaptic plasticity and neuronal adaptations underlying behavior	3
Imaging dendritic spines in the hippocampus of a living mouse by 3D-stimulated emission depletion microscopy	3
Erratum: Improved accuracy of cerebral blood flow quantification in the presence of systemic physiology cross-talk using multi-layer Monte Carlo modeling	3
Special Section Guest Editorial: Open-source neurophotonic tools for neuroscience	3
Influence of source–detector separation on diffuse correlation spectroscopy measurements of cerebral blood flow with a multilayered analytical model	3
Capturing a rising star: the emerging role of astrocytes in neural circuit wiring and plasticity–lessons from the visual system	3
Illuminating the brain: an interview with Karl Deisseroth	3
2024 List of Reviewers	2
Agreement in cerebrovascular reactivity assessed with diffuse correlation spectroscopy across experimental paradigms improves with short separation regression	2
Seizure network characterization by functional connectivity mapping and manipulation	2
Mapping multi-regional functional connectivity of astrocyte-neuronal networks during behaviors	2
Computer vision–guided open-source active commutator for neural imaging in freely behaving animals	2
Detectability of hemodynamic oscillations in cerebral cortex through functional near-infrared spectroscopy: a simulation study	2
High-precision neural stimulation through optoacoustic emitters	2
Characterizing reproducibility of cerebral hemodynamic responses when applying short-channel regression in functional near-infrared spectroscopy	2
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	2
Distribution of spine classes shows intra-neuronal dendritic heterogeneity in mouse cortex	2
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	2
Guiding functional near-infrared spectroscopy optode-layout design using individual (f)MRI data: effects on signal strength	2
Mid-infrared photoacoustic brain imaging enabled by cascaded gas-filled hollow-core fiber lasers	2
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	2
Customizable optode attachments to improve hair clearance timing and inclusiveness in functional near-infrared spectroscopy research	2

NiReject: toward automated bad channel detection in functional near-infrared spectroscopy	2
Group-level cortical functional connectivity patterns using fNIRS: assessing the effect of bilingualism in young infants	2
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	2
Fiber-based lactate recordings with fluorescence resonance energy transfer sensors by applying an magnetic resonance-informed correction of hemodynamic artifacts	2
Neurovascular coupling over cortical brain areas and resting state network connectivity with and without rigidified carotid artery	2
Multiphoton imaging of hippocampal neural circuits: techniques and biological insights into region-, cell-type-, and pathway-specific functions	2
Reducing false discoveries in resting-state functional connectivity using short channel correction: an fNIRS study	2
Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	2
Special Section Guest Editorial: Molecular Neurophotonics	2
Enhanced spectral resolution and reduced acquisition time in fiber-based wavelength-swept source Raman spectroscopy	2
Two-photon imaging of excitatory and inhibitory neural response to infrared neural stimulation	2
Reproducibility of infant fNIRS studies: a meta-analytic approach	1
Statistical approaches to temporal and spatial autocorrelation in resting-state functional connectivity in mice measured with optical intrinsic signal imaging	1
Open-source statistical and data processing tools for wide-field optical imaging data in mice	1
Three-dimensional infrared scanning: an enhanced approach for spatial registration of probes for neuroimaging	1
Short-separation regression incorporated diffuse optical tomography image reconstruction modeling for high-density functional near-infrared spectroscopy	1
OpenSTED: open-source dynamic intensity minimum system for stimulated emission depletion microscopy	1
Viscocohesive hyaluronan gel enhances stability of intravital multiphoton imaging with subcellular resolution	1
Zika virus encephalitis causes transient reduction of functional cortical connectivity	1
Explainable fNIRS-based pain decoding under pharmacological conditions via deep transfer learning approach	1
Revisiting equivalent optical properties for cerebrospinal fluid to improve diffusion-based modeling accuracy in the brain	1
Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension	1
Quantitative simulation of near-infrared light treatment for Alzheimer’s disease using patient-individualized optical-parametric phantoms	1
Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy	1
Predicting poststroke dyskinesia with resting-state functional connectivity in the motor network	1
Efficient opto- and chemogenetic control in a single molecule driven by FRET-modified bioluminescence	1
Differentiation of primary central nervous system lymphoma from glioblastoma using optical coherence tomography based on attention ResNet	1
Enhanced synaptic protein visualization by multicolor super-resolution expansion microscopy	1
Foundry-fabricated dual-color nanophotonic neural probes for photostimulation and electrophysiological recording	1
Multiplexed fiber meta-tip–based circular polarimetry for label-free pathological analysis of ischemic stroke	1
Versatile software and hardware combo enabling photon counting acquisition and real-time display for multiplexing, 2D and continuous 3D two-photon imaging applications	1
Development of polarization-sensitive optical coherence tomography imaging platform and metrics to quantify electrostimulation-induced peripheral nerve injury in vivo in a small animal model	1
Implantable photonic nano-modulators open perspectives for advanced optical interfaces with deep brain areas	1
Techniques for visualizing fibroblast-vessel interactions in the developing and adult CNS	1
Special Guest Editorial: Exploiting Complex Media Photonics to Illuminate Brain’s Hidden Depth	1
High-speed quantitative optical imaging of absolute metabolism in the rat cortex	1
From connectomes to projectomes: an interview with Clay Reid	1
Distinguishing motion artifacts during optical fiber-based in-vivo hemodynamics recordings from brain regions of freely moving rodents	1
Imaging different cell populations in the mouse olfactory bulb using the genetically encoded voltage indicator ArcLight	1
Mind, brain, body, and neuroethics: a conversation with Karen Rommelfanger	1
Special Section Guest Editorial: Hybrid Photonic/X Neurointerfaces	1
Label-free photoacoustic computed tomography of visually evoked responses in the primary visual cortex and four subcortical retinorecipient nuclei of anesthetized mice	1
Connecting the dots between cell populations, whole-brain activity, and behavior	1
Multimode fiber endoscopes for computational brain imaging	1
Comparing different motion correction approaches for resting-state functional connectivity analysis with functional near-infrared spectroscopy data	1
Ultrafast optical imaging techniques for exploring rapid neuronal dynamics	1
Imaging the brain in action: a motorized optical rotary joint for wide field fibroscopy in freely moving animals	1
Ten-kilohertz two-photon microscopy imaging of single-cell dendritic activity and hemodynamics in vivo	1
FiPhA: an open-source platform for fiber photometry analysis	1
Wide-field imaging in behaving mice as a tool to study cognitive function	1
Intrinsic, widefield optical imaging of hemodynamics in rodent models of Alzheimer’s disease and neurological injury	1
Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged in vivo	1
ninjaCap: a fully customizable and 3D printable headgear for functional near-infrared spectroscopy and electroencephalography brain imaging	1
Review of data processing of functional optical microscopy for neuroscience	1
Correction of global physiology in resting-state functional near-infrared spectroscopy	1
Hybrid fiber optic-fMRI for multimodal cell-specific recording and manipulation of neural activity in rodents	1
Adjusting effective multiplicity (Meff) for family-wise error rate in functional near-infrared spectroscopy data with a small sample size	1