OOIR: Observatory of International Research

Papers

(The H4-Index of mSystems is 47. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)

Article	Citations
SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases	489
SARS-CoV-2 and ORF3a: Nonsynonymous Mutations, Functional Domains, and Viral Pathogenesis	174
phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes	164
Gut Microbiota and Metabolome Alterations Associated with Parkinson’s Disease	161
High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County	104
Precise Species Identification for Enterobacter : a Genome Sequence-Based Study with Reporting of Two Novel Species, Enterobacter quasiroggenkampii	95
Soil Carbon, Nitrogen, and Phosphorus Cycling Microbial Populations and Their Resistance to Global Change Depend on Soil C:N:P Stoichiometry	94
Oscillations in U.S. COVID-19 Incidence and Mortality Data Reflect Diagnostic and Reporting Factors	94
Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus	93
Phylogenetic Distribution of Plastic-Degrading Microorganisms	91
Coupling Bacterial Community Assembly to Microbial Metabolism across Soil Profiles	91
Linking Bacterial-Fungal Relationships to Microbial Diversity and Soil Nutrient Cycling	88
Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants	84
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes	83
Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition	77
Space Is More Important than Season when Shaping Soil Microbial Communities at a Large Spatial Scale	73
Pivotal Roles for pH, Lactate, and Lactate-Utilizing Bacteria in the Stability of a Human Colonic Microbial Ecosystem	73
Dominant Bacterial Phyla from the Human Gut Show Widespread Ability To Transform and Conjugate Bile Acids	73
High-Fiber, Whole-Food Dietary Intervention Alters the Human Gut Microbiome but Not Fecal Short-Chain Fatty Acids	69
Genome-Resolved Metagenomics Reveals Distinct Phosphorus Acquisition Strategies between Soil Microbiomes	69
Administration of Exogenous Melatonin Improves the Diurnal Rhythms of the Gut Microbiota in Mice Fed a High-Fat Diet	68
Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria	68
High-Frequency, High-Throughput Quantification of SARS-CoV-2 RNA in Wastewater Settled Solids at Eight Publicly Owned Treatment Works in Northern California Shows Strong Association with COVID-19 Inci	67
Abundant and Diverse RNA Viruses in Insects Revealed by RNA-Seq Analysis: Ecological and Evolutionary Implications	67
Short-Chain Fatty Acid-Producing Gut Microbiota Is Decreased in Parkinson’s Disease but Not in Rapid-Eye-Movement Sleep Behavior Disorder	64

Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment	63
RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery	63
Correlations between α-Linolenic Acid-Improved Multitissue Homeostasis and Gut Microbiota in Mice Fed a High-Fat Diet	59
DOE JGI Metagenome Workflow	58
Genomic and Chemical Diversity of Bacillus subtilis Secondary Metabolites against Plant Pathogenic Fungi	57
Comparative Genomic Analysis of Rapidly Evolving SARS-CoV-2 Reveals Mosaic Pattern of Phylogeographical Distribution	56
Alterations in the Gut Microbiome in the Progression of Cirrhosis to Hepatocellular Carcinoma	56
The Gut Microbiome and Individual-Specific Responses to Diet	55
Impact of Glyphosate on the Honey Bee Gut Microbiota: Effects of Intensity, Duration, and Timing of Exposure	53
Distinct Community Assembly Processes of Abundant and Rare Soil Bacteria in Coastal Wetlands along an Inundation Gradient	52
Long-Term Chemical-Only Fertilization Induces a Diversity Decline and Deep Selection on the Soil Bacteria	51
Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria	51
Temperature-Induced Annual Variation in Microbial Community Changes and Resulting Metabolome Shifts in a Controlled Fermentation System	50
Emerging Transcriptional and Genomic Mechanisms Mediating Carbapenem and Polymyxin Resistance in Enterobacteriaceae : a Systematic Review of Current Reports	50
Fecal Microbiome Transplantation from Children with Autism Spectrum Disorder Modulates Tryptophan and Serotonergic Synapse Metabolism and Induces Altered Behaviors in Germ-Free Mice	49
Insights into the Cultured Bacterial Fraction of Corals	49
Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean	49
Reclassification of the Taxonomic Framework of Orders Cellvibrionales, Oceanospirillales, Pseudomonadales , and Alteromonadales in Class	47
Expanded Phylogenetic Diversity and Metabolic Flexibility of Mercury-Methylating Microorganisms	47
High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy	47
Coexistence of Antibiotic Resistance Genes and Virulence Factors Deciphered by Large-Scale Complete Genome Analysis	47
Introducing the Microbes and Social Equity Working Group: Considering the Microbial Components of Social, Environmental, and Health Justice	47