mSystems

Article	Citations
Gut phageome in Mexican Americans: a population at high risk for metabolic dysfunction-associated steatotic liver disease and diabetes	163
Variations in the oral microbiome and metabolome of methamphetamine users	88
More Than Just a Spearhead: Diverse Functions of PAAR for Assembly and Delivery of Toxins of the Contractile Injection Systems	80
Gut microbiota contribute to high-altitude adaptation in tree sparrows	77
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening	76
Clade-specific long-read sequencing increases the accuracy and specificity of the gyrB phylogenetic marker gene	71
Probiotics Bifidobacterium lactis M8 and Lactobacillus rhamnosus M9 prevent high blood pressure via modulating the gut microbiota composit	68
Botrytis cinerea Transcription Factor BcXyr1 Regulates (Hemi-)Cellulase Production and Fungal Virulence	63
Insights into the metabolic specificities of pathogenic strains from the Ralstonia solanacearum species complex	59
Phenotypic and Genomic Comparison of Staphylococcus aureus Highlight Virulence and Host Adaptation Favoring the Success of Epidemic Clones	58
Disturbance–diversity relationships of microbial communities change based on growth substrate	58
Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics	56
Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation	56
Ancient Metagenomic Studies: Considerations for the Wider Scientific Community	55
Sepsis-Induced Gut Dysbiosis Mediates the Susceptibility to Sepsis-Associated Encephalopathy in Mice	54
Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences	52
Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome	52
Dispersal shapes compositional and functional diversity in aquatic microbial communities	51
An Elemental Diet Enriched in Amino Acids Alters the Gut Microbial Community and Prevents Colonic Mucus Degradation in Mice with Colitis	50
A simple BLASTn-based approach generates novel insights into the regulation and biological function of type I toxin-antitoxins	47
Uncharacterized and lineage-specific accessory genes within the Proteus mirabilis pan-genome landscape	46
The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin-tolerant Staphylococcus aureus	46
Announcing the mSystems special collection on microbial dormancy	45
PhoPQ-mediated lipopolysaccharide modification governs intrinsic resistance to tetracycline and glycylcycline antibiotics in Escherichia coli	45
Diverse non-canonical electron bifurcating [FeFe]-hydrogenases of separate evolutionary origins in Hydrogenedentota	45

Dissecting the genetic features and evolution of Staphylococcus aureus sequence type 88: a global perspective	44
Carbapenem triggers dissemination of chromosomally integrated carbapenemase genes via conjugative plasmids in Escherichia coli	44
Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis	43
In vitro and ex vivo proteomics of Mycobacterium marinum biofilms and the development of biofilm-binding synthetic nano	43
Mucin alleviates colonic barrier dysfunction by promoting spermine accumulation through enhanced arginine metabolism in Limosilactobacillus mucosae	42
Regulatory networks of FUR and NtcA are intertwined by transcriptional regulators, two-component systems, serine/threonine kinases, and sigma factors in Anabaena sp. PCC	40
Visualizing the pH in Escherichia coli Colonies via the Sensor Protein mCherryEA Allows High-Throughput Screening of Mutant Libraries	40
Seasonality and longer-term development generate temporal dynamics in the Populus microbiome	40
Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses	39
A systems-level insight into PHB-driven metabolic adaptation orchestrated by the PHB-binding transcriptional regulator AniA (PhaR)	39
A multi-omics analysis unveils functional and regulatory links between hydroxybenzene and aromatic amino acid metabolism in Candida albicans	39
Sodium butyrate facilitates CRHR2 expression to alleviate HPA axis hyperactivity in autism-like rats induced by prenatal lipopolysaccharides through histone deacetylase inhibition	38
A Metagenomic Investigation of Spatial and Temporal Changes in Sewage Microbiomes across a University Campus	38
Metabolomic profiling of Burkholderia thailandensis infection of airway epithelial cells provides insights into potential therapeutic targets	37
Cell-Cell Signaling Proteobacterial LuxR Solos: a Treasure Trove of Subgroups Having Different Origins, Ligands, and Ecological Roles	36
Microbial Diversity and Interaction Specificity in Kombucha Tea Fermentations	36
STENSL: Microbial Source Tracking with ENvironment SeLection	36
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype	35
Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses	35
Insights into Adaptive Mechanisms of Extreme Acidophiles Based on Quorum Sensing/Quenching-Related Proteins	35
Natural Green Spaces, Sensitization to Allergens, and the Role of Gut Microbiota during Infancy	35
Integrated analysis of metabolome and microbiome in a rat model of perimenopausal syndrome	34
Correction for Boysen et al., “Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean”	34
The transcriptional response to low temperature is weakly conserved across the Enterobacteriaceae	34
Gut-kidney axis modulation by viable and inactivated Akkermansia muciniphila mitigates avian hyperuricemia through microbial-metabolic crosstalk	33
Microbiota-derived indole acetic acid extends lifespan through the AhR-Sirt2 pathway in Drosophila	33
CRISPRi screening reveals E. coli ’s anaerobic-like respiratory adaptations to gentamicin: membrane depolarization by CpxR	32
Erratum for Chen et al., “Evolution of Ciprofloxacin Resistance-Encoding Genetic Elements in Salmonella”	32
Human fecal microbiota transplantation attenuates high dietary oxalate-induced renal calcium oxalate crystal depositions in rats via repairing Allobaculum- related gut b	32
Paired associated SARS-CoV-2 spike variable positions: a network analysis approach to emerging variants	32
The two-component system expression patterns and immune regulatory mechanism of Vibrio parahaemolyticus with different genotypes at the early stage of infection in THP-1	31
Genome-Scale Metabolic Modelling of Lifestyle Changes in Rhizobium leguminosarum	31
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research	31
Microbial Functional Diversity Correlates with Species Diversity along a Temperature Gradient	30
Phenotypic and genomic analysis of the hypervirulent methicillin-resistant Staphylococcus aureus ST630 clone in China	30
Interactive Analysis of Functional Residues in Protein Families	30
Exploring the complex interplay between oral Fusobacterium nucleatum infection, periodontitis, and robust microRNA induction, including multiple known oncogenic miRNAs	30
Cyberlindnera jadinii and Kluyveromyces lactis , two fungi used in food processes, have potential probiotic effects on gut inflammation	29
Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community	29
Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants	29
Long-Term Cellulose Enrichment Selects for Highly Cellulolytic Consortia and Competition for Public Goods	29
Genome-scale metabolic model of the versatile bacterium Paracoccus denitrificans Pd1222	29
Lipidomics and Comparative Metabolite Excretion Analysis of Methanogenic Archaea Reveal Organism-Specific Adaptations to Varying Temperatures and Substrate Concentrations	29
Association of body index with fecal microbiome in children cohorts with ethnic–geographic factor interaction: accurately using a Bayesian zero-inflated negative binomial regression model	29
Separate, separated, and together: the transcriptional program of the Clostridium acetobutylicum-Clostridium ljungdahlii syntrophy leading to interspecies cell fusion	29
A mixed-model approach for estimating drivers of microbiota community composition and differential taxonomic abundance	28
A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology	28
Correction for Brennan et al., “Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution”	28
Mutation in the two-component regulator BaeSR mediates cefiderocol resistance and enhances virulence in Acinetobacter baumannii	28
Functional and Compositional Changes in the Fecal Microbiome of a Shorebird during Migratory Stopover	28

Longitudinal dynamics of the nasopharyngeal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their children	28
Transcriptional Landscape of Ectomycorrhizal Fungi and Their Host Provides Insight into N Uptake from Forest Soil	28
Stimulation of Distinct Rhizosphere Bacteria Drives Phosphorus and Nitrogen Mineralization in Oilseed Rape under Field Conditions	28
Providing insight into the mechanism of action of cationic lipidated oligomers using metabolomics	27
Emergence of plasmid-mediated fosfomycin resistance among Escherichia coli harboring fosA4 , tet (X4), and	27
Connections between Exoproteome Heterogeneity and Virulence in the Oral Pathogen Aggregatibacter actinomycetemcomitans	27
Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia	27
Host Hybridization Dominates over Cohabitation in Affecting Gut Microbiota of Intrageneric Hybrid Takifugu Pufferfish	27
Characterizing alterations in the gut microbiota following postpartum weight change	27
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2	27
Microbial sensor variation across biogeochemical conditions in the terrestrial deep subsurface	27
A data-driven approach for timescale decomposition of biochemical reaction networks	27
Bacillus coagulans restores pathogen-induced intestinal dysfunction via acetate–FFAR2–NF-κB–MLCK–MLC axis in Apostichopus japonicus	27
Frequent Occurrence and Metabolic Versatility of Marinifilaceae Bacteria as Key Players in Organic Matter Mineralization in Global Deep Seas	26
Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure”	26
The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions	26
Meta Biome: a multiscale model integrating agent-based and metabolic networks to reveal spatial regulation in gut mucosal microbial communities	26
(Meta)Genomic Analysis Reveals Diverse Energy Conservation Strategies Employed by Globally Distributed Gemmatimonadota	25
Metabolic biochemical models of N 2 fixation for sulfide oxidizers, methanogens, and methanotrophs	25
Machine learning-based evaluation of risk factors for carbapenem-resistant Klebsiella pneumoniae dissemination in n	25
Migration and standing variation in vaginal and rectal yeast populations in recurrent vulvovaginal candidiasis	25
Bacterial taxonomic and functional changes following oral lyophilized donor fecal microbiota transplantation in patients with ulcerative colitis	25
Food desert residence has limited impact on veteran fecal microbiome composition: a U.S. Veteran Microbiome Project study	25
Multi-omic Profiling Reveals that Intra-abdominal-Hypertension-Induced Intestinal Damage Can Be Prevented by Microbiome and Metabolic Modulations with 5-Hydroxyindoleacetic Acid as a Diagnostic Marker	25
Characterization and Spatial Mapping of the Human Gut Metasecretome	24
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities	24
Involvement of Flagellin in Kin Recognition between Bacillus velezensis Strains	24
More than two components: complexities in bacterial phosphosignaling	24
Using Community Ecology Theory and Computational Microbiome Methods To Study Human Milk as a Biological System	23
Temporal Dynamics of Rare and Abundant Soil Bacterial Taxa from Different Fertilization Regimes Under Various Environmental Disturbances	23
Global m6A RNA and whole 5mC DNA methylation specifically contribute to cell replicative and premature senescence induced by extrinsic oxidative stress	23
Fine-Scale Reconstruction of the Evolution of FII-33 Multidrug Resistance Plasmids Enables High-Resolution Genomic Surveillance	23
Functional potential and evolutionary response to long-term heat selection of bacterial associates of coral photosymbionts	23
Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome	23
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings	23
Longitudinal Study of the Effects of Flammulina velutipes Stipe Wastes on the Cecal Microbiota of Laying Hens	23
N 2 Fixation in Trichodesmium Does Not Require Spatial Segregation from Photosynthesis	23
Growth hormone combined with estrogen improves intrauterine adhesion fibrosis by downregulating endometrial microbial citraconic acid to target β-catenin protein	23
Systematic evaluation of phenotypic variations induced by prophages in a clinical isolate of Pseudomonas aeruginosa	23
Note on the Difference between the Principal Balance Analysis with NearestBalance and Constrained Methods	22
Soil properties and plant functional traits have different importance in shaping rhizosphere soil bacterial and fungal communities in a meadow steppe	22
Proteome efficiency of metabolic pathways in Escherichia coli increases along the nutrient flow	22
Molecular physiology of Antarctic diatom natural assemblages and bloom event reveal insights into strategies contributing to their ecological success	22
Auxin-mediated regulation of susceptibility to toxic metabolites, c-di-GMP levels, and phage infection in the rhizobacterium Serratia plymuthica	22
Bile acid-gut microbiota imbalance in cholestasis and its long-term effect in mice	21
Thermodynamic and Kinetic Modeling Directs Pathway Optimization for Isopropanol Production in a Gas-Fermenting Bacterium	21
2024 Acknowledgment of mSystems Ad Hoc Reviewers	21
Deep learning enabled integration of tumor microenvironment microbial profiles and host gene expressions for interpretable survival subtyping in diverse types of cancers	21
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease	21
eIF6 deficiency regulates gut microbiota, decreases systemic inflammation, and alleviates atherosclerosis	21
Oxytetracycline hyper-production through targeted genome reduction of Streptomyces rimosus	21
Estimating the size of fields in biomedical sciences	21
Real-world bisphenol A exposure not linked to microbiota dynamics in childhood obesity	21
Identification of a Specific Biomarker of Acinetobacter baumannii Global Clone 1 by Machine Learning and PCR Related to Metabolic Fitness of ESKAPE Pathogens	21
Disproportionation of Inorganic Sulfur Compounds by Mesophilic ChemolithoautotrophicCampylobacterota	20
Differences in salivary microbiome among children with tonsillar hypertrophy and/or adenoid hypertrophy	20
Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli	20
A benchmark of optimization solvers for genome-scale metabolic modeling of organisms and communities	20
Microbial life-history strategies and genomic traits between pristine and cropland soils	20
Repurposing of the antimalarial agent tafenoquine to combat MRSA	20
Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia	20
Regionalization and Shaping Factors for Microbiomes and Core Resistomes in Atmospheric Particulate Matters	20
Genome-Guided Discovery of Natural Products through Multiplexed Low-Coverage Whole-Genome Sequencing of Soil Actinomycetes on Oxford Nanopore Flongle	20
Soil microbiome interventions for carbon sequestration and climate mitigation	20
Identification of a crucial INO2 allele for enhancing ethanol resistance in an industrial fermentation strain of Saccharomyces cer	20
Genome-resolved year-round dynamics reveal a broad range of giant virus microdiversity	20
Dynamics of the Gut Microbiome in Shigella -Infected Children during the First Two Years of Life	20
Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism	20
Secondary metabolite profiling of Pseudomonas aeruginosa isolates reveals rare genomic traits	20
Adaptive attenuation of virulence in hypervirulent carbapenem-resistant Klebsiella pneumoniae	20
Predicting the Next Superspreader	19
Metabologenomics reveals strain-level genetic and chemical diversity of Microcystis secondary metabolism	19
2021 Acknowledgment of mSystems Ad Hoc Reviewers	19
Conceptual Exchanges for Understanding Free-Living and Host-Associated Microbiomes	19
Antibacterial effect of phage cocktails and phage-antibiotic synergy against pathogenic Klebsiella pneumoniae	19
A bacterial sensor taxonomy across earth ecosystems for machine learning applications	19
AcaFinder: Genome Mining for Anti-CRISPR-Associated Genes	19
Virus–prokaryote infection pairs associated with prokaryotic production in a freshwater lake	19
Plasmid-borne mcr-1 and replicative transposition of episomal and chromosomal bla NDM-1 , bla	19
Augmenting bacterial similarity measures using a graph-based genome representation	19

Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples	19
Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes	19
Sharing of Antimicrobial Resistance Genes between Humans and Food Animals	19
Kinetics-based inference of environment-dependent microbial interactions and their dynamic variation	19
Strong Dispersal Limitation of Microbial Communities at Shackleton Glacier, Antarctica	19
Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions	19
Neutral plasma-activated solution reverses polymyxin to inhibit polymyxin-resistant Acinetobacter baumannii by promoting the release of ROS and destroying the outer memb	19
Reply to Austin and Korem, “Compositional transformations can reasonably introduce phenotype-associated values into sparse features”	19
From insect endosymbiont to phloem colonizer: comparative genomics unveils the lifestyle transition of phytopathogenic Arsenophonus strains	18
Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction	18
Cell behaviors underlying Myxococcus xanthus aggregate dispersal	18
The resistomes of rural and urban pigs and poultry in Ghana	18
Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils	18
Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs	18
Outbreak of NDM-5-producing Klebsiella pneumoniae ST307: an emerging high-risk antimicrobial resistance clone in Shanghai, China	18
Unveiling the role of phages in shaping the periodontal microbial ecosystem	18
Global Composition of the Bacteriophage Community in Honey Bees	18
Multi-level regulation of hindgut homeostasis by volatile fatty acid administration in dairy goats: linking microbial metabolism to epithelial inflammation and barrier function	18
Transcriptome Dynamics of Pseudomonas aeruginosa during Transition from Overlapping To Non-Overlapping Cell Cycles	18
Tracing the evolution: the rise of Salmonella Thompson co-resistant to clinically important antibiotics in China, 1997–2020	18
A Genomic Survey of the Natural Product Biosynthetic Potential of Actinomycetes Isolated from New Zealand Lichens	18
Viral infection to the raphidophycean alga Heterosigma akashiwo affects both intracellular organic matter composition and dynamics of a coastal prokaryot	18
The heterogenous and diverse population of prophages in Mycobacterium genomes	18
Protist Diversity and Metabolic Strategy in Freshwater Lakes Are Shaped by Trophic State and Watershed Land Use on a Continental Scale	18
Race, the Vaginal Microbiome, and Spontaneous Preterm Birth	18
Modification and analysis of context-specific genome-scale metabolic models: methane-utilizing microbial chassis as a case study	18
Fiber, microbiomes, and SCFAs: insights from companion animal models to inform personalized nutrition	18
Ribosome profiling reveals the fine-tuned response of Escherichia coli to mild and severe acid stress	18
Localization and symbiotic status of probiotics in the coral holobiont	18
Identification and Characterization of Major Bile Acid 7α-Dehydroxylating Bacteria in the Human Gut	18
Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions	18
Genetic and Transcriptomic Characteristics of RhlR-Dependent Quorum Sensing in Cystic Fibrosis Isolates of Pseudomonas aeruginosa	17
A new hypothesis on BV etiology: dichotomous and crisscrossing categorization of complex versus simple on healthy versus BV vaginal microbiomes	17
Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies	17
Benchmarking low- and high-throughput protein cleanup and digestion methods for human fecal metaproteomics	17
The Future Is Big—and Small: Remote Sensing Enables Cross-Scale Comparisons of Microbiome Dynamics and Ecological Consequences	17
GplR1, an unusual TetR-like transcription factor in Mycobacterium abscessus, controls the production of cell wall glycopeptidolipids, colony morphology, and virulence	17
Genomic and functional characterization of a Butyricicoccus porcorum strain isolated from human gut microbiota	17
Global Analysis of Biomineralization Genes in Magnetospirillum magneticum AMB-1	17
Intra-tumor microbiome-based tumor survival indices predict immune interaction and drug sensitivity on pan-cancer scale	17
Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems	17
The function of the gut microbiota–bile acid–TGR5 axis in diarrhea-predominant irritable bowel syndrome	17
Comprehensive genomic landscape of antibiotic resistance in Staphylococcus epidermidis	17
Metabolic remodeling of microorganisms by mobile genetic elements alters mutualistic community composition	17
Genetic requirements for uropathogenic E. coli proliferation in the bladder cell infection cycle	17
The dung beetle microbiome complements host metabolism and nutrition	17
BaeR and H-NS control CRISPR-Cas-mediated immunity and virulence in Acinetobacter baumannii	17
Apex Predator Nematodes and Meso-Predator Bacteria Consume Their Basal Insect Prey through Discrete Stages of Chemical Transformations	17
Antimicrobial resistance in a protracted war setting: a review of the literature from Palestine	17
Bacterial alarmone (p)ppGpp mediates the pathogenicity of Clavibacter michiganensis via a dual mechanism that affects both enzyme production and the Tat secretion system	16
Caenorhabditis nematodes influence microbiome and metabolome characteristics of their natural apple substrates over time	16
Comprehensive characterization of gastrointestinal microbiota dysbiosis in patients with refractory Helicobacter pylori infection	16
Methods and Strategies to Uncover Coral-Associated Microbial Dark Matter	16
Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution	16
Evidence for a Putative Isoprene Reductase in Acetobacterium wieringae	16
Chlamydial YAP activation in host endocervical epithelial cells mediates pro-fibrotic paracrine stimulation of fibroblasts	16
Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture	16
Short-Chain Fatty Acids Reduced Renal Calcium Oxalate Stones by Regulating the Expression of Intestinal Oxalate Transporter SLC26A6	16
Allosteric regulation of pyruvate kinase enables efficient and robust gluconeogenesis by preventing metabolic conflicts and carbon overflow	16
Unexplored diversity and potential functions of extra-chromosomal elements	16
Interactions between native soil microbiome and a synthetic microbial community reveals bacteria with persistent traits	16
Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level	16
Wood–Ljungdahl pathway found in novel marine Korarchaeota groups illuminates their evolutionary history	16
Use of single-cell technology to improve our understanding of the role of TLR2 in macrophage– Mycobacterium tuberculosis interaction	16
Antiviral defense systems in the rumen microbiome	16
Genome-resolved insights into the bacterial phylum WOR-3: hydrogenotrophic metabolism and unique carbon fixation via archaeal form III RuBisCO	16
Moisture Controls the Suppression of Panax notoginseng Root Rot Disease by Indigenous Bacterial Communities	16
Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85	16
Building a queer- and trans-inclusive microbiology conference	16
Nutrient Availability and Phage Exposure Alter the Quorum-Sensing and CRISPR-Cas-Controlled Population Dynamics of Pseudomonas aeruginosa	16
Molecular Origins of Transcriptional Heterogeneity in Diazotrophic Klebsiella oxytoca	16
The combination of Clostridium butyricum and Akkermansia muciniphila mitigates DSS-induced colitis and attenuates colitis-associated tumor	15
Interactions between Culturable Bacteria Are Predicted by Individual Species’ Growth	15
A CRISPR interference system for engineering biological nitrogen fixation	15
Interspecies relationships of natural amoebae and bacteria with C. elegans create environments propitious for multigenerational diapause	15
Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems	15
Erratum for Brüwer et al., “ In situ cell division and mortality rates of SAR11, SAR86, Bacteroidetes , and Aurantivirga	15
Bacterial community function increases leaf growth in a pitcher plant experimental system	15
Gut microbiome diversity and biogeography for Chinese bumblebee Bombus pyrosoma	15
Comparative metagenome-associated analysis of gut microbiota and antibiotic resistance genes in acute gastrointestinal injury patients with the risk of in-hospital mortality	15
Antitumor Activities of tRNA-Derived Fragments and tRNA Halves from Non-pathogenic Escherichia coli Strains on Colorectal Cancer and Their Structure-Activity Relationship	15
Proteomics and Transcriptomics Uncover Key Processes for Elasnin Tolerance in Methicillin-Resistant Staphylococcus aureus	15
Differential genome organization revealed by comparative topological analysis of Mycobacterium tuberculosis strains H37Rv and H37Ra	15
Interplay between bacterial 5′-NAD-RNA decapping hydrolase NudC and DEAD-box RNA helicase CsdA in stress responses	15
Gut Microbiome Alterations Associated with Diabetes in Mexican Americans in South Texas	15
Characterization of a Marine Diatom Chitin Synthase Using a Combination of Meta-Omics, Genomics, and Heterologous Expression Approaches	15
Multi-trajectories of BMI, waist circumference, gut microbiota, and incident dyslipidemia: a 27-year prospective study	15
NanoCore: core-genome-based bacterial genomic surveillance and outbreak detection in healthcare facilities from Nanopore and Illumina data	15
Discovery and characterization of novel DNA viruses in Apis mellifera : expanding the honey bee virome through metagenomic analysis	15
Comparison of different microbiome analysis pipelines to validate their reproducibility of gastric mucosal microbiome composition	15
Interrogation of Essentiality in the Reconstructed Haemophilus influenzae Metabolic Network Identifies Lipid Metabolism Antimicrobial Targets: Preclinical Evaluation of a FabH β-Ketoacyl-ACP Synthase	15
The direct and indirect drivers shaping RNA viral communities in grassland soils	15
Gut microbiome diversity within Clostridia is negatively associated with human obesity	15
Response of the gut microbiome and metabolome to dietary fiber in healthy dogs	15
A sequential one-pot approach for rapid and convenient characterization of putative restriction-modification systems	15