mSystems

Article	Citations
A systems-level insight into PHB-driven metabolic adaptation orchestrated by the PHB-binding transcriptional regulator AniA (PhaR)	104
The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin-tolerant Staphylococcus aureus	97
STENSL: Microbial Source Tracking with ENvironment SeLection	91
Dissecting the genetic features and evolution of Staphylococcus aureus sequence type 88: a global perspective	80
Visualizing the pH in Escherichia coli Colonies via the Sensor Protein mCherryEA Allows High-Throughput Screening of Mutant Libraries	78
In vitro and ex vivo proteomics of Mycobacterium marinum biofilms and the development of biofilm-binding synthetic nano	72
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype	72
Natural Green Spaces, Sensitization to Allergens, and the Role of Gut Microbiota during Infancy	67
Gut phageome in Mexican Americans: a population at high risk for metabolic dysfunction-associated steatotic liver disease and diabetes	66
Announcing the mSystems special collection on microbial dormancy	65
Regulatory networks of FUR and NtcA are intertwined by transcriptional regulators, two-component systems, serine/threonine kinases, and sigma factors in Anabaena sp. PCC	62
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening	61
A simple BLASTn-based approach generates novel insights into the regulation and biological function of type I toxin-antitoxins	61
Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences	59
Unraveling the disease pyramid: the role of environmental micro-eukaryotes in amphibian resistance to the deadly fungal pathogen Batrachochytrium dendrobatidis	58
Cell-Cell Signaling Proteobacterial LuxR Solos: a Treasure Trove of Subgroups Having Different Origins, Ligands, and Ecological Roles	54
Probiotics Bifidobacterium lactis M8 and Lactobacillus rhamnosus M9 prevent high blood pressure via modulating the gut microbiota composit	53
Phenotypic and Genomic Comparison of Staphylococcus aureus Highlight Virulence and Host Adaptation Favoring the Success of Epidemic Clones	53
Seasonality and longer-term development generate temporal dynamics in the Populus microbiome	52
Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses	52
Abrogation of SOS mutagenesis by the E. coli OxyR oxidative stress response	51
The chicken gut virome: spatial structuring and extensive diversity of 19,778 viral populations	51
Navigating complexity: key considerations for studying fungal-bacterial interactions	48
A multi-omics analysis unveils functional and regulatory links between hydroxybenzene and aromatic amino acid metabolism in Candida albicans	44
Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome	44

An Elemental Diet Enriched in Amino Acids Alters the Gut Microbial Community and Prevents Colonic Mucus Degradation in Mice with Colitis	44
Sodium butyrate facilitates CRHR2 expression to alleviate HPA axis hyperactivity in autism-like rats induced by prenatal lipopolysaccharides through histone deacetylase inhibition	44
Dispersal shapes compositional and functional diversity in aquatic microbial communities	44
Carbapenem triggers dissemination of chromosomally integrated carbapenemase genes via conjugative plasmids in Escherichia coli	43
Unraveling proteomic chaos by independent component analysis—ClpX proficiency promotes the iron and oxygen limitation responses of Staphylococcus aureus	43
Botrytis cinerea Transcription Factor BcXyr1 Regulates (Hemi-)Cellulase Production and Fungal Virulence	41
Diverse non-canonical electron bifurcating [FeFe]-hydrogenases of separate evolutionary origins in Hydrogenedentota	41
Microbial Diversity and Interaction Specificity in Kombucha Tea Fermentations	40
Insights into the metabolic specificities of pathogenic strains from the Ralstonia solanacearum species complex	40
Variations in the oral microbiome and metabolome of methamphetamine users	40
Disturbance–diversity relationships of microbial communities change based on growth substrate	40
Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics	39
A Metagenomic Investigation of Spatial and Temporal Changes in Sewage Microbiomes across a University Campus	39
Gut microbiota contribute to high-altitude adaptation in tree sparrows	38
Sepsis-Induced Gut Dysbiosis Mediates the Susceptibility to Sepsis-Associated Encephalopathy in Mice	38
Reduced glutathione levels in Enterococcus faecalis trigger metabolic and transcriptional compensatory adjustments during iron exposure	38
Metabolomic profiling of Burkholderia thailandensis infection of airway epithelial cells provides insights into potential therapeutic targets	38
Clade-specific long-read sequencing increases the accuracy and specificity of the gyrB phylogenetic marker gene	37
Uncharacterized and lineage-specific accessory genes within the Proteus mirabilis pan-genome landscape	35
Functional and Compositional Changes in the Fecal Microbiome of a Shorebird during Migratory Stopover	35
PhoPQ-mediated lipopolysaccharide modification governs intrinsic resistance to tetracycline and glycylcycline antibiotics in Escherichia coli	35
Cyberlindnera jadinii and Kluyveromyces lactis , two fungi used in food processes, have potential probiotic effects on gut inflammation	35
Mucin alleviates colonic barrier dysfunction by promoting spermine accumulation through enhanced arginine metabolism in Limosilactobacillus mucosae	35
Safeguarding microbial biodiversity: microbial conservation specialist group within the species survival commission of the International Union for Conservation of Nature	35
Erratum for Chen et al., “Evolution of Ciprofloxacin Resistance-Encoding Genetic Elements in Salmonella”	34
Two solutions for efficient light-harvesting in phototrophic Gemmatimonadota	34
The two-component system expression patterns and immune regulatory mechanism of Vibrio parahaemolyticus with different genotypes at the early stage of infection in THP-1	34
Correction for Boysen et al., “Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean”	34
Integrative multi-omics analysis reveals gut-skin axis mechanisms and novel therapeutic target GALE in atopic dermatitis	34
Phenotypic and genomic analysis of the hypervirulent methicillin-resistant Staphylococcus aureus ST630 clone in China	34
Gut-kidney axis modulation by viable and inactivated Akkermansia muciniphila mitigates avian hyperuricemia through microbial-metabolic crosstalk	33
Metagenomic analysis of fecal microbiomes reveals genetic potential for diverse hydrogen management strategies in marsupials	33
Interactive Analysis of Functional Residues in Protein Families	32
Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community	32
Paired associated SARS-CoV-2 spike variable positions: a network analysis approach to emerging variants	32
Machine learning and causal inference applied to the gut metagenome-metabolome axis reveals a link between neonatal jaundice and autism spectrum disorder	32
Separate, separated, and together: the transcriptional program of the Clostridium acetobutylicum-Clostridium ljungdahlii syntrophy leading to interspecie	31
Mutation in the two-component regulator BaeSR mediates cefiderocol resistance and enhances virulence in Acinetobacter baumannii	31
Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants	31
A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology	31
Human fecal microbiota transplantation attenuates high dietary oxalate-induced renal calcium oxalate crystal depositions in rats via repairing Allobaculum- related gut b	31
Short-chain fatty acid-producing microbes differentiate non-infectious and infectious neutropenic fever in leukemia	31
Association of body index with fecal microbiome in children cohorts with ethnic–geographic factor interaction: accurately using a Bayesian zero-inflated negative binomial regression model	30
Genome-scale metabolic model of the versatile bacterium Paracoccus denitrificans Pd1222	30
Stimulation of Distinct Rhizosphere Bacteria Drives Phosphorus and Nitrogen Mineralization in Oilseed Rape under Field Conditions	30
Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses	30
CRISPRi screening reveals E. coli ’s anaerobic-like respiratory adaptations to gentamicin: membrane depolarization by CpxR	30
Characterizing alterations in the gut microbiota following postpartum weight change	29
Microbiota-derived indole acetic acid extends lifespan through the AhR-Sirt2 pathway in Drosophila	29
Integrated analysis of metabolome and microbiome in a rat model of perimenopausal syndrome	29

Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research	29
Exploring the complex interplay between oral Fusobacterium nucleatum infection, periodontitis, and robust microRNA induction, including multiple known oncogenic miRNAs	29
A mixed-model approach for estimating drivers of microbiota community composition and differential taxonomic abundance	29
Lipidomics and Comparative Metabolite Excretion Analysis of Methanogenic Archaea Reveal Organism-Specific Adaptations to Varying Temperatures and Substrate Concentrations	29
The transcriptional response to low temperature is weakly conserved across the Enterobacteriaceae	29
Providing insight into the mechanism of action of cationic lipidated oligomers using metabolomics	28
Multi-omic Profiling Reveals that Intra-abdominal-Hypertension-Induced Intestinal Damage Can Be Prevented by Microbiome and Metabolic Modulations with 5-Hydroxyindoleacetic Acid as a Diagnostic Marker	28
Metagenomic, metabolomic, and sensorial characteristics of fermented Coffea arabica L. var. Castillo beans inoculated with microbial starter cultures	28
N 2 Fixation in Trichodesmium Does Not Require Spatial Segregation from Photosynthesis	28
Emergence of plasmid-mediated fosfomycin resistance among Escherichia coli harboring fosA4 , tet (X4), and	28
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2	28
Metabolic biochemical models of N 2 fixation for sulfide oxidizers, methanogens, and methanotrophs	27
Host Hybridization Dominates over Cohabitation in Affecting Gut Microbiota of Intrageneric Hybrid Takifugu Pufferfish	27
Food desert residence has limited impact on veteran fecal microbiome composition: a U.S. Veteran Microbiome Project study	27
Correction for Brennan et al., “Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution”	27
Phylo-Spec: a phylogeny-fusion deep learning model advances microbiome status identification	27
Characterization and Spatial Mapping of the Human Gut Metasecretome	26
Catabolism of acetosyringone and co-metabolic transformation of 2,4,6-trichlorophenol by a novel FAD-dependent monooxygenase	26
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities	26
Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia	26
The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions	26
Microbial sensor variation across biogeochemical conditions in the terrestrial deep subsurface	26
Connections between Exoproteome Heterogeneity and Virulence in the Oral Pathogen Aggregatibacter actinomycetemcomitans	26
Longitudinal dynamics of the nasopharyngeal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their children	26
Community-associated quinolone-resistant and extended-spectrum beta-lactamase-producing Escherichia coli isolates are similar to clinical infection isola	25
Migration and standing variation in vaginal and rectal yeast populations in recurrent vulvovaginal candidiasis	25
Assessment of genome evolution in Bifidobacterium adolescentis indicates genetic adaptation to the human gut	25
From ecology to evolution: plasmid- and colicin-mediated persistence of antibiotic-resistant Escherichia coli in gulls	25
Functional potential and evolutionary response to long-term heat selection of bacterial associates of coral photosymbionts	25
Bacillus coagulans restores pathogen-induced intestinal dysfunction via acetate–FFAR2–NF-κB–MLCK–MLC axis in Apostichopus japonicus	25
Bacterial taxonomic and functional changes following oral lyophilized donor fecal microbiota transplantation in patients with ulcerative colitis	25
Longitudinal Study of the Effects of Flammulina velutipes Stipe Wastes on the Cecal Microbiota of Laying Hens	25
Involvement of Flagellin in Kin Recognition between Bacillus velezensis Strains	25
Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome	24
Note on the Difference between the Principal Balance Analysis with NearestBalance and Constrained Methods	24
Growth hormone combined with estrogen improves intrauterine adhesion fibrosis by downregulating endometrial microbial citraconic acid to target β-catenin protein	24
More than two components: complexities in bacterial phosphosignaling	24
A data-driven approach for timescale decomposition of biochemical reaction networks	24
Distinct properties of human pathogenic Candida species revealed by systematic comparative phenotypic screening of clinical isolates	24
Real-world bisphenol A exposure not linked to microbiota dynamics in childhood obesity	24
Multi-strain analysis of Pseudomonas putida reveals the metabolic and genetic diversity of the species	24
Meta Biome: a multiscale model integrating agent-based and metabolic networks to reveal spatial regulation in gut mucosal microbial communities	24
Frequent Occurrence and Metabolic Versatility of Marinifilaceae Bacteria as Key Players in Organic Matter Mineralization in Global Deep Seas	24
Machine learning-based evaluation of risk factors for carbapenem-resistant Klebsiella pneumoniae dissemination in n	24
(Meta)Genomic Analysis Reveals Diverse Energy Conservation Strategies Employed by Globally Distributed Gemmatimonadota	24
Empowering global disease surveillance with CURED: a tool for rapid identification of unique genomic biomarkers	24
2024 Acknowledgment of mSystems Ad Hoc Reviewers	23
Taurine attenuates Listeria monocytogenes -induced inflammation and pyroptosis in mouse model by regulating MAPK and NLRP3/caspase-1/GSDMD pathways	23
Estimating the size of fields in biomedical sciences	23
Thermodynamic and Kinetic Modeling Directs Pathway Optimization for Isopropanol Production in a Gas-Fermenting Bacterium	23
eIF6 deficiency regulates gut microbiota, decreases systemic inflammation, and alleviates atherosclerosis	23
Secondary metabolite profiling of Pseudomonas aeruginosa isolates reveals rare genomic traits	23
Dissecting two contrasting phytoplankton-symbiont interaction modes based on population dynamics and gene expression patterns	23
Dynamics of the Gut Microbiome in Shigella -Infected Children during the First Two Years of Life	23
Global m6A RNA and whole 5mC DNA methylation specifically contribute to cell replicative and premature senescence induced by extrinsic oxidative stress	23
Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism	23
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings	23
Disproportionation of Inorganic Sulfur Compounds by Mesophilic ChemolithoautotrophicCampylobacterota	23
Identification of a crucial INO2 allele for enhancing ethanol resistance in an industrial fermentation strain of Saccharomyces cer	23
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease	23
Proteome efficiency of metabolic pathways in Escherichia coli increases along the nutrient flow	23
Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia	23
Temporal Dynamics of Rare and Abundant Soil Bacterial Taxa from Different Fertilization Regimes Under Various Environmental Disturbances	22
Regionalization and Shaping Factors for Microbiomes and Core Resistomes in Atmospheric Particulate Matters	22
Molecular physiology of Antarctic diatom natural assemblages and bloom event reveal insights into strategies contributing to their ecological success	22
Genome-resolved year-round dynamics reveal a broad range of giant virus microdiversity	22
Elucidation of population-based bacterial adaptation to antimicrobial treatment by single-cell sequencing analysis of the gut microbiome of a hospital patient	22
Oxytetracycline hyper-production through targeted genome reduction of Streptomyces rimosus	22
Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli	22
Repurposing of the antimalarial agent tafenoquine to combat MRSA	22
Group A streptococcal PerR coordinates iron and zinc homeostasis through Dpr, aiding in bacterial fitness during endothelial cell infection	22
Adaptive attenuation of virulence in hypervirulent carbapenem-resistant Klebsiella pneumoniae	22
Soil properties and plant functional traits have different importance in shaping rhizosphere soil bacterial and fungal communities in a meadow steppe	22
A benchmark of optimization solvers for genome-scale metabolic modeling of organisms and communities	22
Bile acid-gut microbiota imbalance in cholestasis and its long-term effect in mice	21
Lactiplantibacillus plantarum 082 ameliorates heat stress-induced testicular injury by modulating the gut microbiota	21
Identification of a Specific Biomarker of Acinetobacter baumannii Global Clone 1 by Machine Learning and PCR Related to Metabolic Fitness of ESKAPE Pathogens	21
Sharing of Antimicrobial Resistance Genes between Humans and Food Animals	21
Model-informed development of bacteriophage therapy: bridging in vitro and in vivo efficacy against multid	21
Auxin-mediated regulation of susceptibility to toxic metabolites, c-di-GMP levels, and phage infection in the rhizobacterium Serratia plymuthica	21

Soil microbiome interventions for carbon sequestration and climate mitigation	21
Sodium butyrate inhibits colorectal cancer development by reducing M2 macrophage polarization and PD-L1 expression	21
The respiratory microbiome in pulmonary tuberculosis: a meta-analysis reveals niche-specific microbial and functional signatures	21
Systematic evaluation of phenotypic variations induced by prophages in a clinical isolate of Pseudomonas aeruginosa	21
Deep learning enabled integration of tumor microenvironment microbial profiles and host gene expressions for interpretable survival subtyping in diverse types of cancers	21
High-throughput chemical genomic screening: a step-by-step workflow from plate to phenotype	20
Fiber, microbiomes, and SCFAs: insights from companion animal models to inform personalized nutrition	20
Metabologenomics reveals strain-level genetic and chemical diversity of Microcystis secondary metabolism	20
Transcriptome Dynamics of Pseudomonas aeruginosa during Transition from Overlapping To Non-Overlapping Cell Cycles	20
Virus–prokaryote infection pairs associated with prokaryotic production in a freshwater lake	20
Differences in salivary microbiome among children with tonsillar hypertrophy and/or adenoid hypertrophy	20
Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes	20
A bacterial sensor taxonomy across earth ecosystems for machine learning applications	20
Predicting the Next Superspreader	20
Multi-level regulation of hindgut homeostasis by volatile fatty acid administration in dairy goats: linking microbial metabolism to epithelial inflammation and barrier function	20
AcaFinder: Genome Mining for Anti-CRISPR-Associated Genes	20
Outbreak of NDM-5-producing Klebsiella pneumoniae ST307: an emerging high-risk antimicrobial resistance clone in Shanghai, China	20
Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions	20
From insect endosymbiont to phloem colonizer: comparative genomics unveils the lifestyle transition of phytopathogenic Arsenophonus strains	20
Neutral plasma-activated solution reverses polymyxin to inhibit polymyxin-resistant Acinetobacter baumannii by promoting the release of ROS and destroyin	20
The resistomes of rural and urban pigs and poultry in Ghana	20
Cell behaviors underlying Myxococcus xanthus aggregate dispersal	20
Benchmarking low- and high-throughput protein cleanup and digestion methods for human fecal metaproteomics	20
Microbial life-history strategies and genomic traits between pristine and cropland soils	20
Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs	20
The heterogenous and diverse population of prophages in Mycobacterium genomes	20
Unveiling the role of phages in shaping the periodontal microbial ecosystem	19
Identification and Characterization of Major Bile Acid 7α-Dehydroxylating Bacteria in the Human Gut	19
Enterohemorrhagic Escherichia coli O157:H7 responds to norepinephrine gradients by tRNA reprogramming and codon-biased translation of virulence genes	19
Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions	19
Reply to Austin and Korem, “Compositional transformations can reasonably introduce phenotype-associated values into sparse features”	19
Augmenting bacterial similarity measures using a graph-based genome representation	19
Ribosome profiling reveals the fine-tuned response of Escherichia coli to mild and severe acid stress	19
Viral infection to the raphidophycean alga Heterosigma akashiwo affects both intracellular organic matter composition and dynamics of a coastal prokaryot	19
Tracing the evolution: the rise of Salmonella Thompson co-resistant to clinically important antibiotics in China, 1997–2020	19
Dysbiosis of fecal virome in pediatric Crohn’s disease and its dynamic changes during infliximab therapy	19
Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples	19
Modification and analysis of context-specific genome-scale metabolic models: methane-utilizing microbial chassis as a case study	19
Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems	19
Screening of exogenous nutrients for pathogenic bacteria and development of highly active bactericides	19
Strong Dispersal Limitation of Microbial Communities at Shackleton Glacier, Antarctica	19
A Genomic Survey of the Natural Product Biosynthetic Potential of Actinomycetes Isolated from New Zealand Lichens	19
The dung beetle microbiome complements host metabolism and nutrition	19
S'Wipe: user-friendly stool collection for high-throughput gut metabolomics and multi-omics	19
Kinetics-based inference of environment-dependent microbial interactions and their dynamic variation	19
Race, the Vaginal Microbiome, and Spontaneous Preterm Birth	19
Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction	18
Antibacterial effect of phage cocktails and phage-antibiotic synergy against pathogenic Klebsiella pneumoniae	18
Building a queer- and trans-inclusive microbiology conference	18
Bacterial alarmone (p)ppGpp mediates the pathogenicity of Clavibacter michiganensis via a dual mechanism that affects both enzyme production and the Tat secretion system	18
Plasmid-borne mcr-1 and replicative transposition of episomal and chromosomal bla NDM-1 , bla	18
Protist Diversity and Metabolic Strategy in Freshwater Lakes Are Shaped by Trophic State and Watershed Land Use on a Continental Scale	18
Molecular Origins of Transcriptional Heterogeneity in Diazotrophic Klebsiella oxytoca	18
Comprehensive genomic landscape of antibiotic resistance in Staphylococcus epidermidis	18
Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies	18
Intra-tumor microbiome-based tumor survival indices predict immune interaction and drug sensitivity on pan-cancer scale	18
Localization and symbiotic status of probiotics in the coral holobiont	18
Wood–Ljungdahl pathway found in novel marine Korarchaeota groups illuminates their evolutionary history	18
BaeR and H-NS control CRISPR-Cas-mediated immunity and virulence in Acinetobacter baumannii	18
Use of single-cell technology to improve our understanding of the role of TLR2 in macrophage– Mycobacterium tuberculosis interaction	18
Chlamydial YAP activation in host endocervical epithelial cells mediates pro-fibrotic paracrine stimulation of fibroblasts	17
Comparison of different microbiome analysis pipelines to validate their reproducibility of gastric mucosal microbiome composition	17
Nutrient Availability and Phage Exposure Alter the Quorum-Sensing and CRISPR-Cas-Controlled Population Dynamics of Pseudomonas aeruginosa	17
Genetic requirements for uropathogenic E. coli proliferation in the bladder cell infection cycle	17
Antiviral defense systems in the rumen microbiome	17
Evidence for a Putative Isoprene Reductase in Acetobacterium wieringae	17
Spatial metabolomics reveals the role of penicillic acid in cheese-rind microbiome disruption by a spoilage fungus	17
GplR1, an unusual TetR-like transcription factor in Mycobacterium abscessus, controls the production of cell wall glycopeptidolipids, colony morphology,	17
The macroecological dynamics of sojourn trajectories in the human gut microbiome	17
Dormancy and reactivation of the seed and its microbiome: a holobiont perspective	17
Antimicrobial resistance in a protracted war setting: a review of the literature from Palestine	17
Moisture Controls the Suppression of Panax notoginseng Root Rot Disease by Indigenous Bacterial Communities	17
Methods and Strategies to Uncover Coral-Associated Microbial Dark Matter	17
Genome-resolved insights into the bacterial phylum WOR-3: hydrogenotrophic metabolism and unique carbon fixation via archaeal form III RuBisCO	17
Interactions between Culturable Bacteria Are Predicted by Individual Species’ Growth	17
Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level	17
Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85	17
Associations between the microbiome and immune responses to an adenovirus-based HIV-1 candidate vaccine are distinct between African and US cohorts	17
Interactions between native soil microbiome and a synthetic microbial community reveals bacteria with persistent traits	16
The combination of Clostridium butyricum and Akkermansia muciniphila mitigates DSS-induced colitis and attenuates colitis-associated tumor	16
Taxonomic and metabolic development of the human gut microbiome across life stages: a worldwide metagenomic investigation	16
Erratum for Brüwer et al., “ In situ cell division and mortality rates of SAR11, SAR86, Bacteroidetes , a	16
Gut microbiome diversity and biogeography for Chinese bumblebee Bombus pyrosoma	16
Unexplored diversity and potential functions of extra-chromosomal elements	16
The function of the gut microbiota–bile acid–TGR5 axis in diarrhea-predominant irritable bowel syndrome	16
Metabolic remodeling of microorganisms by mobile genetic elements alters mutualistic community composition	16
Comparative metagenome-associated analysis of gut microbiota and antibiotic resistance genes in acute gastrointestinal injury patients with the risk of in-hospital mortality	16
Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli	16
NanoCore: core-genome-based bacterial genomic surveillance and outbreak detection in healthcare facilities from Nanopore and Illumina data	16
Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture	16
Discovery and characterization of novel DNA viruses in Apis mellifera : expanding the honey bee virome through metagenomic analysis	16
Response of the gut microbiome and metabolome to dietary fiber in healthy dogs	16
Ectomycorrhizal fungi alter soil food webs and the functional potential of bacterial communities	16
Differential genome organization revealed by comparative topological analysis of Mycobacterium tuberculosis strains H37Rv and H37Ra	16
The direct and indirect drivers shaping RNA viral communities in grassland soils	16