Cell Chemical Biology

Papers
(The TQCC of Cell Chemical Biology is 16. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-05-01 to 2024-05-01.)
ArticleCitations
PROTACs: An Emerging Therapeutic Modality in Precision Medicine249
Targeted protein degradation: A promise for undruggable proteins120
The Chemical Biology of Ferroptosis in the Central Nervous System109
MGST1 is a redox-sensitive repressor of ferroptosis in pancreatic cancer cells101
Targeted degradation of transcription factors by TRAFTACs: TRAnscription Factor TArgeting Chimeras96
Chemoproteomics-enabled discovery of covalent RNF114-based degraders that mimic natural product function93
Targeted degradation of the enhancer lysine acetyltransferases CBP and p30086
Haven't got a glue: Protein surface variation for the design of molecular glue degraders81
The Chemical Biology of Reversible Lysine Post-translational Modifications80
Recent advances in identifying protein targets in drug discovery74
Discovery of a Functional Covalent Ligand Targeting an Intrinsically Disordered Cysteine within MYC69
Development of potent and selective inhibitors targeting the papain-like protease of SARS-CoV-267
Chemical Tools for Endogenous Protein Labeling and Profiling65
Introduction to Thiopeptides: Biological Activity, Biosynthesis, and Strategies for Functional Reprogramming64
Development of a potent and selective chemical probe for the pleiotropic kinase CK264
Expanding the arsenal of E3 ubiquitin ligases for proximity-induced protein degradation63
Seeing (and Using) the Light: Recent Developments in Bioluminescence Technology63
Illuminating RNA Biology: Tools for Imaging RNA in Live Mammalian Cells62
Targeted Degradation of SLC Transporters Reveals Amenability of Multi-Pass Transmembrane Proteins to Ligand-Induced Proteolysis61
Structure-Aided Development of Small-Molecule Inhibitors of ENPP1, the Extracellular Phosphodiesterase of the Immunotransmitter cGAMP59
Using the Oxytosis/Ferroptosis Pathway to Understand and Treat Age-Associated Neurodegenerative Diseases58
An E3 ligase guide to the galaxy of small-molecule-induced protein degradation57
Eradicating Bacterial Persisters with Combinations of Strongly and Weakly Metabolism-Dependent Antibiotics56
Inhibition of Resistance-Refractory P. falciparum Kinase PKG Delivers Prophylactic, Blood Stage, and Transmission-Blocking Antiplasmodial Activity55
The role of reversible and irreversible covalent chemistry in targeted protein degradation54
FADS2-dependent fatty acid desaturation dictates cellular sensitivity to ferroptosis and permissiveness for hepatitis C virus replication53
A Cell-Based Target Engagement Assay for the Identification of Cereblon E3 Ubiquitin Ligase Ligands and Their Application in HDAC6 Degraders52
Development of Potent, Selective Surrogate WNT Molecules and Their Application in Defining Frizzled Requirements52
An automatic pipeline for the design of irreversible derivatives identifies a potent SARS-CoV-2 Mpro inhibitor48
How to untie G-quadruplex knots and why?48
A biaryl-linked tripeptide from Planomonospora reveals a widespread class of minimal RiPP gene clusters47
Specific Knockdown of α-Synuclein by Peptide-Directed Proteasome Degradation Rescued Its Associated Neurotoxicity45
A Robust, GFP-Orthogonal Photoswitchable Inhibitor Scaffold Extends Optical Control over the Microtubule Cytoskeleton45
Modulating Androgen Receptor-Driven Transcription in Prostate Cancer with Selective CDK9 Inhibitors45
Context-dependent regulation of ferroptosis sensitivity44
HSP90 Inhibition Enhances Cancer Immunotherapy by Modulating the Surface Expression of Multiple Immune Checkpoint Proteins44
Chemo-proteomics exploration of HDAC degradability by small molecule degraders44
Chemogenomics identifies acetyl-coenzyme A synthetase as a target for malaria treatment and prevention44
Lanthanide-Based Optical Probes of Biological Systems44
Strategies for Tuning the Selectivity of Chemical Probes that Target Serine Hydrolases43
CRISPR-Mediated Protein Tagging with Nanoluciferase to Investigate Native Chemokine Receptor Function and Conformational Changes42
Targeting Endogenous K-RAS for Degradation through the Affinity-Directed Protein Missile System42
Inducible Degradation of Target Proteins through a Tractable Affinity-Directed Protein Missile System42
Systematic Chemogenetic Library Assembly40
The proteasome and its role in the nervous system40
Morphological profiling of small molecules40
Structure-kinetic relationship reveals the mechanism of selectivity of FAK inhibitors over PYK239
Degradation from the outside in: Targeting extracellular and membrane proteins for degradation through the endolysosomal pathway39
Nuisance compounds in cellular assays38
A potent and selective PARP14 inhibitor decreases protumor macrophage gene expression and elicits inflammatory responses in tumor explants38
Dual targeting of DDX3 and eIF4A by the translation inhibitor rocaglamide A38
Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth36
Targeting the PI5P4K Lipid Kinase Family in Cancer Using Covalent Inhibitors36
Ubiquitin ligases in cancer: Functions and clinical potentials35
Chemoproteomics-enabled discovery of a covalent molecular glue degrader targeting NF-κB35
A fine-tuned azobenzene for enhanced photopharmacology in vivo34
Macrocyclic Peptide-Mediated Blockade of the CD47-SIRPα Interaction as a Potential Cancer Immunotherapy34
A Clickable APEX Probe for Proximity-Dependent Proteomic Profiling in Yeast34
Optical control of targeted protein degradation34
Acriflavine, a clinically approved drug, inhibits SARS-CoV-2 and other betacoronaviruses34
Identification and selectivity profiling of small-molecule degraders via multi-omics approaches33
Hit Triage and Validation in Phenotypic Screening: Considerations and Strategies33
Discovery and characterization of a selective IKZF2 glue degrader for cancer immunotherapy33
Plasmodium vivax Liver and Blood Stages Recruit the Druggable Host Membrane Channel Aquaporin-333
Exploring the target scope of KEAP1 E3 ligase-based PROTACs32
Assessing IRAK4 Functions in ABC DLBCL by IRAK4 Kinase Inhibition and Protein Degradation32
Decoding the messaging of the ubiquitin system using chemical and protein probes31
Directed evolution of potent neutralizing nanobodies against SARS-CoV-2 using CDR-swapping mutagenesis31
DogCatcher allows loop-friendly protein-protein ligation30
Rapamycin targets STAT3 and impacts c-Myc to suppress tumor growth30
A NSD3-targeted PROTAC suppresses NSD3 and cMyc oncogenic nodes in cancer cells29
Targeted In Situ Protein Diversification and Intra-organelle Validation in Mammalian Cells29
Quantitative Imaging of Labile Zn2+ in the Golgi Apparatus Using a Localizable Small-Molecule Fluorescent Probe29
Small molecule targeting of biologically relevant RNA tertiary and quaternary structures28
Polynuclear Ruthenium Amines Inhibit K2P Channels via a “Finger in the Dam” Mechanism28
An antibody-based proximity labeling map reveals mechanisms of SARS-CoV-2 inhibition of antiviral immunity28
Proteomics-Based Identification of DUB Substrates Using Selective Inhibitors28
Small Substrate or Large? Debate Over the Mechanism of Glycation Adduct Repair by DJ-127
Identification of a Covalent Molecular Inhibitor of Anti-apoptotic BFL-1 by Disulfide Tethering27
Ferroptosis inhibition by lysosome-dependent catabolism of extracellular protein27
Site-Specific Photo-Crosslinking Proteomics Reveal Regulation of IFITM3 Trafficking and Turnover by VCP/p97 ATPase27
Mimicry of a Non-ribosomally Produced Antimicrobial, Brevicidine, by Ribosomal Synthesis and Post-translational Modification27
Capsaicin ameliorates inflammation in a TRPV1-independent mechanism by inhibiting PKM2-LDHA-mediated Warburg effect in sepsis27
Chemical Biology Tools for Examining the Bacterial Cell Wall27
High-content phenotypic and pathway profiling to advance drug discovery in diseases of unmet need27
Cell-free production of personalized therapeutic phages targeting multidrug-resistant bacteria27
Targeting Two-Component Systems Uncovers a Small-Molecule Inhibitor of Salmonella Virulence26
The chemical tools for imaging dopamine release26
A small-molecule inhibitor of the BRCA2-RAD51 interaction modulates RAD51 assembly and potentiates DNA damage-induced cell death26
Functional mimicry revealed by the crystal structure of an eIF4A:RNA complex bound to the interfacial inhibitor, desmethyl pateamine A25
Blockade of Oncogenic NOTCH1 with the SERCA Inhibitor CAD204520 in T Cell Acute Lymphoblastic Leukemia25
ND3 Cys39 in complex I is exposed during mitochondrial respiration25
CysDB: a human cysteine database based on experimental quantitative chemoproteomics25
3D two-photon brain imaging reveals dihydroartemisinin exerts antiepileptic effects by modulating iron homeostasis25
Morphological profiling by means of the Cell Painting assay enables identification of tubulin-targeting compounds24
Bifunctional modalities for repurposing protein function24
Chemically modified guide RNAs enhance CRISPR-Cas13 knockdown in human cells24
Chemoproteomic-enabled phenotypic screening24
An IMiD-inducible degron provides reversible regulation for chimeric antigen receptor expression and activity24
Polypharmacological Perturbation of the 14-3-3 Adaptor Protein Interactome Stimulates Neurite Outgrowth24
The future of phenotypic drug discovery24
A Small Molecule that Binds an RNA Repeat Expansion Stimulates Its Decay via the Exosome Complex23
Rational Design of Bioavailable Photosensitizers for Manipulation and Imaging of Biological Systems23
An Isoform-Selective Modulator of Cryptochrome 1 Regulates Circadian Rhythms in Mammals23
Identification of structurally diverse FSP1 inhibitors that sensitize cancer cells to ferroptosis23
Mechanism of Cell Penetration by Permeabilization of Late Endosomes: Interplay between a Multivalent TAT Peptide and Bis(monoacylglycero)phosphate23
Exploiting ubiquitin ligase cereblon as a target for small-molecule compounds in medicine and chemical biology23
Human iPSC modeling of heart disease for drug development23
A synthetic small molecule stalls pre-mRNA splicing by promoting an early-stage U2AF2-RNA complex23
Thermal proteome profiling identifies the membrane-bound purinergic receptor P2X4 as a target of the autophagy inhibitor indophagolin23
Inhibition of Nonfunctional Ras23
Piperlongumine conjugates induce targeted protein degradation23
Development and pre-clinical testing of a novel hypoxia-activated KDAC inhibitor22
Triplexed Affinity Reagents to Sample the Mammalian Inositol Pyrophosphate Interactome22
Small-molecule allosteric inhibitors of GPX422
A photo-cross-linking GlcNAc analog enables covalent capture of N-linked glycoprotein-binding partners on the cell surface22
Monitoring Allosteric Interactions with CXCR4 Using NanoBiT Conjugated Nanobodies22
Formation of an aminovinyl-cysteine residue in thioviridamides occurs through a path independent of known lanthionine synthetase activity21
Identification of a PCSK9-LDLR disruptor peptide with in vivo function21
Endogenous vitamin E metabolites mediate allosteric PPARγ activation with unprecedented co-regulatory interactions21
A Pseudomonas aeruginosa PQS quorum-sensing system inhibitor with anti-staphylococcal activity sensitizes polymicrobial biofilms to tobramycin21
Y box binding protein 1 inhibition as a targeted therapy for ovarian cancer21
Target protein localization and its impact on PROTAC-mediated degradation21
Selective Modulation of Dynamic Protein Complexes21
Enhancing the Antiviral Efficacy of RNA-Dependent RNA Polymerase Inhibition by Combination with Modulators of Pyrimidine Metabolism21
Regulation of MIF Enzymatic Activity by an Allosteric Site at the Central Solvent Channel21
A Preclinical Candidate Targeting Mycobacterium tuberculosis KasA21
Increased energy demand from anabolic-catabolic processes drives β-lactam antibiotic lethality21
Making the cut with protease engineering21
CETSA interaction proteomics define specific RNA-modification pathways as key components of fluorouracil-based cancer drug cytotoxicity20
Engineering DNA-Templated Nonribosomal Peptide Synthesis20
Quantitative chemoproteomics reveals O-GlcNAcylation of cystathionine γ-lyase (CSE) represses trophoblast syncytialization20
The non-canonical target PARP16 contributes to polypharmacology of the PARP inhibitor talazoparib and its synergy with WEE1 inhibitors20
Selective autophagy as the basis of autophagy-based degraders20
Light-controllable RNA-protein devices for translational regulation of synthetic mRNAs in mammalian cells20
Hypomorph mutation-directed small-molecule protein-protein interaction inducers to restore mutant SMAD4-suppressed TGF-β signaling19
tRNAArg-Derived Fragments Can Serve as Arginine Donors for Protein Arginylation19
Identification and validation of selective deubiquitinase inhibitors19
Photoswitchable CAR-T Cell Function In Vitro and In Vivo via a Cleavable Mediator19
Chlorcyclizine Inhibits Viral Fusion of Hepatitis C Virus Entry by Directly Targeting HCV Envelope Glycoprotein 119
A synthetic diterpene analogue inhibits mycobacterial persistence and biofilm formation by targeting (p)ppGpp synthetases19
Inhibition of glucose transport synergizes with chemical or genetic disruption of mitochondrial metabolism and suppresses TCA cycle-deficient tumors19
TK216 targets microtubules in Ewing sarcoma cells19
Protein acylation by saturated very long chain fatty acids and endocytosis are involved in necroptosis19
Catalytic Domain Plasticity of MKK7 Reveals Structural Mechanisms of Allosteric Activation and Diverse Targeting Opportunities18
Chemical Biology Toolkit for DCLK1 Reveals Connection to RNA Processing18
Concise Chemoenzymatic Total Synthesis and Identification of Cellular Targets of Cepafungin I18
PALP: A rapid imaging technique for stratifying ferroptosis sensitivity in normal and tumor tissues in situ18
Peptide-Based PROTAC: The Predator of Pathological Proteins18
Re-wiring the regulation of the formicamycin biosynthetic gene cluster to enable the development of promising antibacterial compounds18
Site-Specific Incorporation of Genetically Encoded Photo-Crosslinkers Locates the Heteromeric Interface of a GPCR Complex in Living Cells18
Periplasmic expression of SpyTagged antibody fragments enables rapid modular antibody assembly18
Mechanism-Based Personalized Medicine for Cystic Fibrosis by Suppressing Pseudo Exon Inclusion18
Combined Omics Approach Identifies Gambogic Acid and Related Xanthones as Covalent Inhibitors of the Serine Palmitoyltransferase Complex18
Fatty acid chain length drives lysophosphatidylserine-dependent immunological outputs18
Combined morphological and proteome profiling reveals target-independent impairment of cholesterol homeostasis18
A Systematic Analysis of Mosquito-Microbiome Biosynthetic Gene Clusters Reveals Antimalarial Siderophores that Reduce Mosquito Reproduction Capacity17
Metabolic targeting of cancer by a ubiquinone uncompetitive inhibitor of mitochondrial complex I17
Ligand-induced interactions between butyrophilin 2A1 and 3A1 internal domains in the HMBPP receptor complex17
Re-defining synthetic lethality by phenotypic profiling for precision oncology17
A direct high-throughput protein quantification strategy facilitates discovery and characterization of a celastrol-derived BRD4 degrader17
Identification of cell wall synthesis inhibitors active against Mycobacterium tuberculosis by competitive activity-based protein profiling17
Modulation of lanosterol synthase drives 24,25-epoxysterol synthesis and oligodendrocyte formation17
In Vitro and Cellular Probes to Study PARP Enzyme Target Engagement17
A PROTAC targets splicing factor 3B116
Phenotypic screening with target identification and validation in the discovery and development of E3 ligase modulators16
Proteostasis Regulators Restore Function of Epilepsy-Associated GABAA Receptors16
Dipyridamole Inhibits Lipogenic Gene Expression by Retaining SCAP-SREBP in the Endoplasmic Reticulum16
Physical and Functional Analysis of the Putative Rpn13 Inhibitor RA19016
Discovery of an Inhibitor for Bacterial 3-Mercaptopyruvate Sulfurtransferase that Synergistically Controls Bacterial Survival16
The rise of degrader drugs16
Sulfotyrosine-Mediated Recognition of Human Thrombin by a Tsetse Fly Anticoagulant Mimics Physiological Substrates16
Inhibition of Staphylococcus aureus biofilm-forming functional amyloid by molecular tweezers16
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