Molecular Omics

Article	Citations
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Integration of focal adhesion morphogenesis and polarity by DOCK5 promotes YAP/TAZ-driven drug resistance in TNBC	26
Advancing science through data sharing: a new data policy for Molecular Omics	26
The relationship between bacterial outer membrane vesicles and halophilic adaptation	25
Cancer evaluation in dogs using cerumen as a source for volatile biomarker prospection	23
Comparative glycomic analysis of hawk ( Rupornis magnirostris ), caiman ( Caiman latirostris ) and sea tur	23
Front cover	21
Proteomic analysis reveals mechanisms underlying increased efficacy of bleomycin by photochemical internalization in bladder cancer cells	21
The RNA cargo of Myxococcus outer membrane vesicles	21
Back cover	20
Temperature- and time-dependent degradation of mouse tissue proteins: insights into RNA-binding protein stability via mass spectrometry	20
Plasma metabolomic signatures from patients following high-dose total body irradiation	19
Metabolomics reveals the impact of the saturation of dietary lipids on the aging and longevity of C. elegans	19
Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1–CoREST interactome during embryonic stem cell differentiation	19
Correction: Analysis of N-glycosylation protein of Kashin–Beck disease chondrocytes derived from induced pluripotent stem cells based on label-free strategies with LC-MS/MS	18
Discovery of candidate biomarkers from plasma-derived extracellular vesicles of patients with cirrhosis and hepatocellular carcinoma: an exploratory proteomic study	18
Contents list	17
Contents list	17
Contents list	17
Inside front cover	16
Nucleolin perturbation alters membrane lipid homeostasis	16
Unraveling the phenotypic and metabolic responses induced by urea-encapsulated hydrogel beads on Brassica juncea (L.) Czern & Coss	16

Transcriptome profiling of serum exosomes by RNA-Seq reveals lipid metabolic changes as a potential biomarker for evaluation of roxadustat treatment of chronic kidney diseases	14
Front cover	14
Revealing the dynamics of fungal disease with proteomics	14
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Enhanced anti-inflammatory and anti-fibrotic effects of nanoparticles loaded with a combination of Aloe vera–Moringa oleifera extracts	13
Understanding pulmonary hypertension: the need for an integrative metabolomics and transcriptomics approach	13
Front cover	12
Untargeted metabolomics analysis reveals spatial metabolic heterogeneity in different intestinal segments of type 1 diabetic mice	12
Prunus mongolica oil attenuates hepatic fibrosis via a lncRNA-mediated ceRNA network targeting dual PGC-1α/PPARγ and TGF-β/Sma	12
Systematic characterization of m6A proteomics across 12 cancer types: a multi-omics integration study	11
Back cover	11
Analysis of FAIMS for the study of affinity-purified protein complexes using the orbitrap ascend tribrid mass spectrometer	11
Complementarity of two proteomic data analysis tools in the identification of drug-metabolising enzymes and transporters in human liver	11
Functional response of microbial communities in lab-controlled oil-contaminated marine sediment	10
Unraveling the role of intra-cellular metabolites in the lactic acid production by novel Bacillus amyloliquefaciens using sugarcane molasses as a substratum	10
Antibiotic-induced gut microbiota dysbiosis altered host metabolism	10
Lipid profile variability in children at different ages measured in dried blood spots	9
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Lnc-TMEM132D-AS1 as a potential therapeutic target for acquired resistance to osimertinib in non-small-cell lung cancer	9
Contents list	9
Inside front cover	9
Sequencing, assembly, and genomic annotation of Leucoagaricus gongylophorus LEU18496, a dikarya mutualistic species	9
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The alteration of urinary metabolomics profiles in Kashin–Beck disease in a three consecutive year study	9
Front cover	9
Single cell proteomics analysis of drug response shows its potential as a drug discovery platform	8
Omics approaches to better understand the molecular mechanism of necroptosis and their translational implications	8
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Identification of prognostic factors in classic Hodgkin lymphoma by integrating whole slide imaging and next generation sequencing	8
Laser capture microdissection-capillary zone electrophoresis-tandem mass spectrometry (LCM-CZE-MS/MS) for spatially resolved top-down proteomics: a pilot study of zebrafish brain	8
Systemic analysis of lipid metabolism from individuals to multi-organism systems	8
Comprehensive expression profiles of mRNAs, lncRNAs and miRNAs in Kashin-Beck disease identified by RNA-sequencing	8
Activation of KLF6 by titanate nanofibers and regulatory roles of KLF6 on ATF3 in the endothelial monolayer and mouse aortas	8
Serum metabolomics reveals the metabolic profile and potential biomarkers of ankylosing spondylitis	8
Inside front cover	7
Species-level identification of enterotype-specific microbial markers for colorectal cancer and adenoma	7
Ethyl acetate extract of Caesalpinia sappan L. for the treatment of atherosclerosis in ApoE−/− mice and its mechanism	7
Proteomic changes associated with racial background and sepsis survival outcomes	7
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Proteomics-based molecular and functional characteristic profiling of muscle tissue in Triploid crucian carp	7
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Spatial proteomic alterations detected via MALDI-MS imaging implicate neuronal loss in a Huntington's disease mouse (YAC128) brain	6
Human circulatory proteome interaction, oxidative stress-associated signalling and cardiovascular implications during titanium dioxide nanoparticle (TiO2-NP) exposure	6
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Antimalarial mechanism of action of the natural product 9-methoxystrobilurin G	6
Front cover	6

Integrating N-glycan and CODEX imaging reveal cell-specific protein glycosylation in healthy human lung	6
Label-free quantitation of the changes in salivary proteome associated with the chronic consumption of the betel nut (Areca catechu)	6
Proteomic and metabolomic dissection of the BRAF V600E mutation-induced cellular state transition in lung epithelial cells	6
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Contents list	6
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Pre-illness data reveals differences in multiple metabolites and metabolic pathways in those who do and do not recover from infectious mononucleosis	6
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Circular RNA profiles of osteoarthritic synovium	6
Intact cell lipidomics using the Bruker MBT lipid Xtract assay allows the rapid detection of glycosyl-inositol-phospho-ceramides from Aspergillus fumigatus	5
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Sustained hypoxia but not intermittent hypoxia induces HIF-1α transcriptional response in human aortic endothelial cells	5
1H-NMR based metabolic study of MMTV-PyMT mice along with pathological progress to screen biomarkers for the early diagnosis of breast cancer	5
Front cover	5
Comprehensive untargeted lipidomic profiling of third generation lentiviral vectors and packaging cells	5
Lipidomics in forensic science: a comprehensive review of applications in drugs, alcohol, latent fingermarks, fire debris, and seafood authentication	5
MALDI mass spectrometry imaging in plant and food lipidomics: advances, challenges, and future perspectives	5
Chemical diversity of Brittonodoxa subpinnata, a Brazilian native species of moss	5
A comparative performance evaluation of imputation methods in spatially resolved transcriptomics data	5
Lipidomics reveals cell specific changes during pluripotent differentiation to neural and mesodermal lineages	5
Computational approaches leveraging integrated connections of multi-omic data toward clinical applications	5
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Hypoxia-induced alterations in lipid polyunsaturation and associated proteins drive aggressive metastasis in pancreatic cancer via the PPAR/hypoxia pathw	5
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Anti-inflammatory effects of myristic acid mediated by the NF-κB pathway in lipopolysaccharide-induced BV-2 microglial cells	5
Proteomic analysis reveals anticancer mechanisms of Bhallataka taila in inhibiting lung cancer progression and metastasis	5
Deep learning methods and applications in single-cell multimodal data integration	5
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Mass spectrometry-based profiling of phosphoinositide: advances, challenges, and future directions	5
Front cover	4
Protein network analysis links the NSL complex to Parkinson’s disease via mitochondrial and nuclear biology	4
Nontargeted metabolomics reveals differences in the metabolite profiling among methicillin-resistant and methicillin-susceptible Staphylococcus aureus in response to antibiotics	4
Multi-omics insights into the interplay between gut microbiota and colorectal cancer in the “microworld” age	4
A multi-omics machine learning classifier for outgrowth of cow's milk allergy in children	4
An adaptable in silico ensemble model of the arachidonic acid cascade	4
Open-tubular trap columns: towards simple and robust liquid chromatography separations for single-cell proteomics	4
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Unmasking the lipid landscape: carbamazepine induces alterations in Leydig cell lipidome	4
Mammary gland metabolism and its relevance to the fetoplacental expression of cytokine signaling in caveolin-1 null mice	4
Butyrate promotes C2C12 myoblast proliferation by activating ERK/MAPK pathway	4
Profiling protein targets of cellular toxicant exposure	4
Analysis of the transcriptome and metabolome of pancreatic spheroids derived from human induced pluripotent stem cells and matured in an organ-on-a-chip	4
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Investigating the mechanism of Qifu Yin in ameliorating memory disorders through pseudo-targeted lipidomics	3
Graphene oxide links alterations of anti-viral signaling pathways with lipid metabolism via suppressing TLR3 in vascular smooth muscle cells	3
Acute exercise dynamically modulates the hepatic mitochondrial proteome	3
Biochemical and metabolic signatures are fundamental to drought adaptation in PGPR Enterobacter bugandensis WRS7	3
Generation of β-like cell subtypes from differentiated human induced pluripotent stem cells in 3D spheroids	3
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Role of identified proteins in the proteome profiles of CDK4/6 inhibitor-resistant breast cancer cell lines	3
Multi-omic characterisation ofStreptomyces hygroscopicusNRRL 30439: detailed assessment of its secondary metabolic potential	3
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Investigation of cattle plasma proteome in response to pain and inflammation using next generation proteomics technique, SWATH-MS	3
Long-term physical inactivity induces significant changes in biochemical pathways related to metabolism of proteins and glycerophospholipids in mice	3
Integrative analysis of small non-coding RNAs predicts a piRNA/miRNA-CCND1/BRAF/HRH1/ATXN3 regulatory circuit that drives oncogenesis in glioblastoma	3
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Food authentication: truffle species classification by non-targeted lipidomics analyses using mass spectrometry assisted by ion mobility separation	3
Cytokine-induced memory-like responses in endothelial cells link chronic inflammation to vascular disease risk	3
Front cover	3
Prediction of quality markers in Maren Runchang pill for constipation using machine learning and network pharmacology	3
Retraction: Tetracycline-controllable artificial microRNA-HOTAIR + EZH2 suppressed the progression of bladder cancer cells	3
Pancreatic cancer environment: from patient-derived models to single-cell omics	3
Biomarkers of heart failure: advances in omics studies	3
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Distinct global metabolomic profiles of the model organismCaenorhabditis elegansduring interactions withStaphylococcus aureusandSalmonella entericaSerovar Typhi	3
GRL–PUL: predicting microbe–drug association based on graph representation learning and positive unlabeled learning	2
Front cover	2
Screening and identification of key microRNAs and regulatory pathways associated with the renal fibrosis process	2
LC-MS-based metabolomics reveals the in vivo effect of Shegan Mahuang Decoction in an OVA-induced rat model of airway hyperresponsiveness	2
Size exclusion chromatography based proteomic and degradomic profiling of inflammasome-activated, murine bone marrow-derived dendritic cells highlights complex retention and release of cleavage produc	2
A comparative lipidomic study of the human placenta from women with or without gestational diabetes mellitus	2
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A bright future for proteomics of health and disease. Introduction to the US HUPO 2021 themed issue – proteomics from single cell to systems biology in health and disease	2
An altered proteome in ovarian cancer stem-like cells: profiling of the mDivi-1 induced proteome and its clinical significance	2
Pre-analytical aspects in metabolomics of human biofluids – sample collection, handling, transport, and storage	2
Exon–intron boundary detection made easy by physicochemical properties of DNA	2
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Cronobacter sakazakii infection implicates multifaceted neuro-immune regulatory pathways of Caenorhabditis elegans	2

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Advancing colorectal cancer research through lipidomics	2
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Integrating host and microbiome biology using holo-omics	2
Proteome- and metabolome-level changes during early stages of clubroot infection in Brassica napus canola	2
Lamiophlomis rotata attenuates rheumatoid arthritis by regulating sphingolipid and steroid hormone metabolism	2
Mapping the Helichrysum metabolome: uncovering species-specific chemistry through an AI-guided LC-MS/MS workflow	2
Competing technologies: determining the geographical origin of strawberries (Fragaria × ananassa) using laboratory based near-infrared spectroscopy compared to a simple portable device	2
TarpiD, a database of putative and validated targets of piRNAs	1
Correction: Metabolomics study reveals the alteration of fatty acid oxidation in the hearts of diabetic mice by empagliflozin	1
Integrated multi-omics analyses of microbial communities: a review of the current state and future directions	1
Multi-omics data integration for topology-based pathway activation assessment and personalized drug ranking	1
Outstanding Reviewers for Molecular Omics in 2021	1
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Differentially regulated saliva proteome and metabolome: a way forward for risk-assessment of oral cancer among tobacco abusers	1
A 9-gene biomarker panel identifies bacterial coinfections in culture-negative COVID-19 cases	1
KDM4B, a potential prognostic biomarker revealed by large-scale public databases and clinical samples in uterine corpus endometrial carcinoma	1
Inside front cover	1
A Q-marker screening strategy based on ADME studies and systems biology for Chinese herbal medicine, taking Qianghuo Shengshi decoction in treating rheumatoid arthritis as an example	1
Outstanding Reviewers for Molecular Omics in 2023	1
Selective labeling of tyrosine residues in proteins: insights from PTAD labeling and tandem mass spectrometry analysis	1
Front cover	1
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IVS I-5 (G > C) is associated with changes to the RBC membrane lipidome in response to hydroxyurea treatment in β-thalassemia patients	1
Comprehensive comparison of sample preparation workflows for proteomics	1
Investigation of the motif activity of transcription regulators in pancreatic β-like cell subpopulations differentiated from human induced pluripotent stem cells	1
TALKIEN: crossTALK IntEraction Network. A web-based tool for deciphering molecular communication through ligand–receptor interactions	1
Network modeling suggests HIV infection phenocopies PI3K-AKT pathway mutations to enhance HPV-associated cervical cancer	1
Correction: Generation of β-like cell subtypes from differentiated human induced pluripotent stem cells in 3D spheroids	1
Phosphoproteomic analysis reveals the effects of sleep deprivation on the hippocampus in mice	1
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Multi-omic profiling of histone variant H3.3 lysine 27 methylation reveals a distinct role from canonical H3 in stem cell differentiation	1
Re-mining serum proteomics data reveals extensive post-translational modifications upon Zika and dengue infection	1
Focus on the molecular mechanisms of cisplatin resistance based on multi-omics approaches	1
Metabolomics approach to understand molecular mechanisms involved in fungal pathogen–citrus pathosystems	1
Influence of sex, age, ethnicity/race, and body mass index on the cerumen volatilome using two data analysis approaches: binary and semiquantitative	1
Advancements in automation for plasma proteomics sample preparation	1