Nature Machine Intelligence

Article	Citations
Author Correction: A 5′ UTR language model for decoding untranslated regions of mRNA and function predictions	517
Author Correction: Advancing COVID-19 diagnosis with privacy-preserving collaboration in artificial intelligence	444
Physical benchmarks for testing algorithms	378
Wiring up recurrent neural networks	359
Materiality and risk in the age of pervasive AI sensors	349
A challenge for the law and artificial intelligence	334
Human autonomy in the age of artificial intelligence	328
A multi-modal deep language model for contaminant removal from metagenome-assembled genomes	304
Discussions of machine versus living intelligence need more clarity	238
A statistical mechanics framework for Bayesian deep neural networks beyond the infinite-width limit	228
Author Correction: Integrated structure prediction of protein–protein docking with experimental restraints using ColabDock	220
Investigating machine moral judgement through the Delphi experiment	213
Physically constrained generative adversarial networks for improving precipitation fields from Earth system models	207
Advancing COVID-19 diagnosis with privacy-preserving collaboration in artificial intelligence	204
A soft-packaged and portable rehabilitation glove capable of closed-loop fine motor skills	195
Wing-strain-based flight control of flapping-wing drones through reinforcement learning	181
Artificial intelligence tackles the nature–nurture debate	179
A question of trust for AI research in medicine	174
Robotic body augmentation	173
A Global South perspective for ethical algorithms and the State	170
Sparsity provides a competitive advantage	166
Maximum diffusion reinforcement learning	165
Advancing ethics review practices in AI research	164
Bringing artificial intelligence to business management	161
Robust virtual staining of landmark organelles with Cytoland	161

Quantum circuit optimization with AlphaTensor	161
The curious case of the test set AUROC	159
Reshaping the discovery of self-assembling peptides with generative AI guided by hybrid deep learning	151
Fast and generalizable micromagnetic simulation with deep neural nets	150
Reusability report: Deep learning-based analysis of images and spectroscopy data with AtomAI	150
Out-of-distribution generalization from labelled and unlabelled gene expression data for drug response prediction	150
Transformer-based protein generation with regularized latent space optimization	135
Direct conformational sampling from peptide energy landscapes through hypernetwork-conditioned diffusion	134
Next-generation phenotyping of inherited retinal diseases from multimodal imaging with Eye2Gene	133
AI pioneers win 2024 Nobel prizes	130
Deep neural networks with controlled variable selection for the identification of putative causal genetic variants	130
Recurrent graph optimal transport for learning 3D flow motion in particle tracking	124
Zero-shot transfer of protein sequence likelihood models to thermostability prediction	119
Generative AI for designing and validating easily synthesizable and structurally novel antibiotics	116
What’s the next word in large language models?	104
Integrated structure prediction of protein–protein docking with experimental restraints using ColabDock	104
Machine learning prediction of enzyme optimum pH	103
Combinatorial optimization with physics-inspired graph neural networks	102
Deep spectral component filtering as a foundation model for spectral analysis demonstrated in metabolic profiling	101
Functional mimicry of Ruffini receptors with fibre Bragg gratings and deep neural networks enables a bio-inspired large-area tactile-sensitive skin	101
How to break information cocoons	100
A new perspective on the simulation of stochastic problems in fluid mechanics with diffusion models	99
Laplace neural operator for solving differential equations	98
Learning from models beyond fine-tuning	98
Multi-animal 3D social pose estimation, identification and behaviour embedding with a few-shot learning framework	98
Deep-learning-based identification, tracking, pose estimation and behaviour classification of interacting primates and mice in complex environments	96
Learning function from structure in neuromorphic networks	95
Codon language embeddings provide strong signals for use in protein engineering	93
Collaborative creativity in AI	90
AI reality check	88
Foundation models in healthcare require rethinking reliability	88
Bridging peptide presentation and T cell recognition with multi-task learning	88
Designing a strong test for measuring true common-sense reasoning	87
Accurate and robust protein sequence design with CarbonDesign	87
Life-threatening ventricular arrhythmia detection challenge in implantable cardioverter–defibrillators	84
Seeking a quantum advantage for machine learning	84
A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments	83
Learning high-level visual representations from a child’s perspective without strong inductive biases	82
A personalized time-resolved 3D mesh generative model for unveiling normal heart dynamics	79
The TRIPOD-P reporting guideline for improving the integrity and transparency of predictive analytics in healthcare through study protocols	79
Image-based generation for molecule design with SketchMol	77
What is in your LLM-based framework?	76
Deep learning supported discovery of biomarkers for clinical prognosis of liver cancer	76
Algorithmic fairness and bias mitigation for clinical machine learning with deep reinforcement learning	75
Autoregressive neural-network wavefunctions for ab initio quantum chemistry	74
Tandem mass spectrum prediction for small molecules using graph transformers	74
Unifying multi-sample network inference from prior knowledge and omics data with CORNETO	73
A deep generative model enables automated structure elucidation of novel psychoactive substances	72
Neural scaling of deep chemical models	69
Multimodal learning with graphs	68

A deep generative model for molecule optimization via one fragment modification	68
LLM-based agentic systems in medicine and healthcare	68
Unsupervised learning of topological non-Abelian braiding in non-Hermitian bands	68
A multi-modal pre-training transformer for universal transfer learning in metal–organic frameworks	67
Morphological flexibility in robotic systems through physical polygon meshing	67
Autonomous environment-adaptive microrobot swarm navigation enabled by deep learning-based real-time distribution planning	67
Efficient generation of protein pockets with PocketGen	66
Uncertainty-guided dual-views for semi-supervised volumetric medical image segmentation	65
Human–AI adaptive dynamics drives the emergence of information cocoons	64
Reconstructing growth and dynamic trajectories from single-cell transcriptomics data	64
A method for multiple-sequence-alignment-free protein structure prediction using a protein language model	63
Synthetic data accelerates the development of generalizable learning-based algorithms for X-ray image analysis	63
ResGen is a pocket-aware 3D molecular generation model based on parallel multiscale modelling	62
ARNLE model identifies prevalence potential of SARS-CoV-2 variants	61
Writing the rules in AI-assisted writing	61
Advanced AI assistants that act on our behalf may not be ethically or legally feasible	61
Moving towards genome-wide data integration for patient stratification with Integrate Any Omics	61
Human-behaviour-based social locomotion model improves the humanization of social robots	61
A neuro-vector-symbolic architecture for solving Raven’s progressive matrices	60
Barriers to academic data science research in the new realm of algorithmic behaviour modification by digital platforms	60
Empirical observation of negligible fairness–accuracy trade-offs in machine learning for public policy	59
Improving de novo molecular design with curriculum learning	59
Differentiable visual computing for inverse problems and machine learning	59
Enhancing deep learning-based field reconstruction with a differentiable learning framework	58
Anniversary AI reflections	58
Model-based reinforcement learning for ultrasound-driven autonomous microrobots	58
From attribution maps to human-understandable explanations through Concept Relevance Propagation	57
Global field reconstruction from sparse sensors with Voronoi tessellation-assisted deep learning	57
The transformational role of GPU computing and deep learning in drug discovery	57
Geometric deep learning reveals the spatiotemporal features of microscopic motion	57
Foundation models and the privatization of public knowledge	57
Learning plastic matching of robot dynamics in closed-loop central pattern generators	57
Publisher Correction: A neural machine code and programming framework for the reservoir computer	55
A social network for AI	55
Mask-prior-guided denoising diffusion improves inverse protein folding	54
Lessons from a challenge on forecasting epileptic seizures from non-cerebral signals	54
Learning integral operators via neural integral equations	54
Benchmarking AI-powered docking methods from the perspective of virtual screening	54
Leveraging language model for advanced multiproperty molecular optimization via prompt engineering	53
Distinguishing two features of accountability for AI technologies	53
Delineating the effective use of self-supervised learning in single-cell genomics	53
Successful implementation of the EU AI Act requires interdisciplinary efforts	53
Artificial intelligence-powered electronic skin	53
Closed-form continuous-time neural networks	52
Active learning for optimal intervention design in causal models	52
Defending ChatGPT against jailbreak attack via self-reminders	52
Mode switching in organisms for solving explore-versus-exploit problems	51
CHGNet as a pretrained universal neural network potential for charge-informed atomistic modelling	51
Advances, challenges and opportunities in creating data for trustworthy AI	51
Interpretable meta-score for model performance	50
Improving customer decisions in web-based e-commerce through guerrilla modding	50
Data-driven discovery of movement-linked heterogeneity in neurodegenerative diseases	49
On board with COMET to improve omics prediction models	49
Listening in to perceived speech with contrastive learning	49
Lossless data compression by large models	48
Deep learning for predicting rate-induced tipping	48
Prediction of robust scientific facts from literature	48
A generalizable deep learning framework for inferring fine-scale germline mutation rate maps	48
The incentive gap in data work in the era of large models	48
A computational framework for neural network-based variational Monte Carlo with Forward Laplacian	47
Unsupervised ensemble-based phenotyping enhances discoverability of genes related to left-ventricular morphology	47
A new eye on inherited retinal disease	47
Incorporating physics into data-driven computer vision	47
Augmenting large language models with chemistry tools	46
Mitigating the missing-fragmentation problem in de novo peptide sequencing with a two-stage graph-based deep learning model	46
Machine learning-enabled globally guaranteed evolutionary computation	46
Fast, scale-adaptive and uncertainty-aware downscaling of Earth system model fields with generative machine learning	45
A unified deep framework for peptide–major histocompatibility complex–T cell receptor binding prediction	45
Molecular contrastive learning of representations via graph neural networks	45
Three types of incremental learning	44
Large language models challenge the future of higher education	44
Deep transfer operator learning for partial differential equations under conditional shift	43
Publisher Correction: Advancing ethics review practices in AI research	43
AI podcasts for the summer	43
Deconstructing the generalization gap	43
Invalid SMILES are beneficial rather than detrimental to chemical language models	43
Space missions out of this world with AI	43
Automated causal inference in application to randomized controlled clinical trials	42
Predicting the prevalence of complex genetic diseases from individual genotype profiles using capsule networks	42
Design of prime-editing guide RNAs with deep transfer learning	42

Physics-based machine learning for subcellular segmentation in living cells	41
Microscopy analysis neural network to solve detection, enumeration and segmentation from image-level annotations	41
Generalized biological foundation model with unified nucleic acid and protein language	41
Discovering neural policies to drive behaviour by integrating deep reinforcement learning agents with biological neural networks	40
Multiscale topology-enabled structure-to-sequence transformer for protein–ligand interaction predictions	40
A process-centric manipulation taxonomy for the organization, classification and synthesis of tactile robot skills	40
Automated construction of cognitive maps with visual predictive coding	40
Pan-Peptide Meta Learning for T-cell receptor–antigen binding recognition	40
Labelling instructions matter in biomedical image analysis	40
Realistic morphology-preserving generative modelling of the brain	40
Hierarchical deep reinforcement learning reveals a modular mechanism of cell movement	40
Reply to: Inability of a graph neural network heuristic to outperform greedy algorithms in solving combinatorial optimization problems	39
Visual speech recognition for multiple languages in the wild	39
A soft touch for robots	39
Synergy-based robotic quadruped leveraging passivity for natural intelligence and behavioural diversity	39
Why design choices matter in recommender systems	38
Ethics methods are required as part of reporting guidelines for artificial intelligence in healthcare	38
No chemical killer AI (yet)	38
Author Correction: Predicting equilibrium distributions for molecular systems with deep learning	38
Embodied large language models enable robots to complete complex tasks in unpredictable environments	37
On the caveats of AI autophagy	37
A disease-specific language model for variant pathogenicity in cardiac and regulatory genomics	37
Geometric deep learning of particle motion by MAGIK	37
A framework for tool cognition in robots without prior tool learning or observation	36
Towards unveiling sensitive and decisive patterns in explainable AI with a case study in geometric deep learning	36
Parameter-efficient fine-tuning of large-scale pre-trained language models	35
Weak signal extraction enabled by deep neural network denoising of diffraction data	35
Iterative human and automated identification of wildlife images	35
In vitro convolutional neural networks	34
DishBrain plays Pong and promises more	34
AI safety for everyone	34
Clinical large language models with misplaced focus	33
Learning fast in autonomous drone racing	33
Testing the limits of SMILES-based de novo molecular generation with curriculum and deep reinforcement learning	33
Publisher Correction: The curious case of the test set AUROC	33
Personalized uncertainty quantification in artificial intelligence	32
Design of potent antimalarials with generative chemistry	31
Large pre-trained language models contain human-like biases of what is right and wrong to do	31
Deep learning-based prediction of the T cell receptor–antigen binding specificity	31
Leveraging ancestral sequence reconstruction for protein representation learning	31
A soft skin with self-decoupled three-axis force-sensing taxels	31
Efficient rare event sampling with unsupervised normalizing flows	31
A ‘programming’ framework for recurrent neural networks	31
Automatic strain sensor design via active learning and data augmentation for soft machines	31
An adaptive graph learning method for automated molecular interactions and properties predictions	31
Learning motif-based graphs for drug–drug interaction prediction via local–global self-attention	30
Sliding-attention transformer neural architecture for predicting T cell receptor–antigen–human leucocyte antigen binding	30
Controllable protein design with language models	30
Categorizing robots by performance fitness into the tree of robots	29
PocketFlow is a data-and-knowledge-driven structure-based molecular generative model	29
Bridging the neutralization gap for unseen antibodies	29
Kernel approximation using analogue in-memory computing	28
Catching up with missing particles	28
Low-power object-detection challenge on unmanned aerial vehicles	28
Sparse learned kernels for interpretable and efficient medical time series processing	28
Inferring transcription factor regulatory networks from single-cell ATAC-seq data based on graph neural networks	27
Modern graph neural networks do worse than classical greedy algorithms in solving combinatorial optimization problems like maximum independent set	27
Generation of 3D molecules in pockets via a language model	26
Self-iterative multiple-instance learning enables the prediction of CD4+ T cell immunogenic epitopes	26
Towards a personalized AI assistant to learn machine learning	26
Enabling large language models for real-world materials discovery	26
A multilevel generative framework with hierarchical self-contrasting for bias control and transparency in structure-based ligand design	26
Neural Error Mitigation of Near-Term Quantum Simulations	25
Predicting unseen antibodies’ neutralizability via adaptive graph neural networks	25
Estimating treatment effects for time-to-treatment antibiotic stewardship in sepsis	25
Language and culture internalization for human-like autotelic AI	25
Uncertainty quantification via a memristor Bayesian deep neural network for risk-sensitive reinforcement learning	25
Accurate online training of dynamical spiking neural networks through Forward Propagation Through Time	24
The future of open human feedback	24
Realizing full-body control of humanoid robots	24
What comparing deep neural networks can teach us about human vision	24
Geometry-enhanced pretraining on interatomic potentials	24
Human-like object concept representations emerge naturally in multimodal large language models	24
A bioactivity foundation model using pairwise meta-learning	24
Reply to: The pitfalls of negative data bias for the T-cell epitope specificity challenge	23
Author Correction: End-to-end cryo-EM complex structure determination with high accuracy and ultra-fast speed	23
Prediction of mechanistic subtypes of Parkinson’s using patient-derived stem cell models	23
High-speed quadrupedal locomotion by imitation-relaxation reinforcement learning	23
Neuromorphic visual scene understanding with resonator networks	23
Bioinspired trajectory modulation for effective slip control in robot manipulation	23
On responsible machine learning datasets emphasizing fairness, privacy and regulatory norms with examples in biometrics and healthcare	23
Multiple stakeholders drive diverse interpretability requirements for machine learning in healthcare	23
Spatially embedded recurrent neural networks reveal widespread links between structural and functional neuroscience findings	23
The promise of generative AI for suicide prevention in India	23
Multitask joint strategies of self-supervised representation learning on biomedical networks for drug discovery	23
Cognitive maps from predictive vision	22
Connecting molecular properties with plain language	22
Playing with symmetry with neural networks	22
A cautionary tale about the adoption of medical AI in Sweden	22
Learning equilibria in symmetric auction games using artificial neural networks	21
Sparse and transferable three-dimensional dynamic vascular reconstruction for instantaneous diagnosis	21
Dimensions underlying the representational alignment of deep neural networks with humans	21
Pick your AI poison	21
Evaluating protein binding interfaces with transformer networks	21
Systematic analysis of 32,111 AI model cards characterizes documentation practice in AI	21